RNA id: TU252032


Basic Information

Item Value
RNA id TU252032
length 671
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G220866
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7552182 ~ 7552852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtctcaacagtgaagaggctctgtgatgctggccttctaggcagagttgcaaagaaaaagacatatctcagactggccaataaaaataaaagatttaagatgggcaaaagaacacagacactggacaaaggaactctgcctagaaggccagcatcccggagtcgcctcttcactgttgacgttgagactggtgttttgtgggtactatttaatgaagctgccagttgaggacttgtgaggcgtctgtttcttaaactagacactccaatgtacttgtcctcttgctcagttgtgcaacgGGGCCTCCaattcctctttctattctggttagagccagtttgcgctgttctttgAAGGGAGTATTACACAGCGTGGTACGAGATCTTCagattcttggcaatttctcgcattgaatagcattcaattctcagaacaagaatagactgacgagtttcagaagaaagcactttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaaggccagttttattgcttctttaatcagtacaatagttttcaactgtgctaacataattgcaaaagggttttctaatgattaattagccttttaaaattgaattagctaacacaggagtgatggaacacag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252029 lncRNA downstream 255 7549673 ~ 7551927 (-) False LOC110508481
TU252030 lncRNA downstream 255 7549673 ~ 7551927 (-) True LOC110508481
TU252091 lncRNA downstream 16757 7535216 ~ 7535425 (-) True G220908
TU252072 lncRNA downstream 47568 7504333 ~ 7504614 (-) True G220894
TU252068 lncRNA downstream 49679 7498513 ~ 7502503 (-) False G220892
TU252034 lncRNA upstream 3491 7556343 ~ 7558636 (-) False LOC110508494
TU252106 lncRNA upstream 36675 7589527 ~ 7591887 (-) True G220922
TU252117 lncRNA upstream 76503 7629355 ~ 7630077 (-) True G220929
TU252118 lncRNA upstream 78200 7631052 ~ 7631372 (-) True G220930
TU252121 lncRNA upstream 81464 7634316 ~ 7634807 (-) True G220933
XM_036967504.1 mRNA downstream 155 7531548 ~ 7552027 (-) False LOC110508481
XM_036967491.1 mRNA downstream 21999 7528527 ~ 7530183 (-) False LOC110508472
XR_005040385.1 mRNA downstream 21999 7528527 ~ 7530183 (-) False LOC110508472
XM_036967497.1 mRNA downstream 22054 7528527 ~ 7530128 (-) False LOC110508472
XM_021588991.2 mRNA downstream 27638 7517195 ~ 7524544 (-) False LOC110508454
XM_036967511.1 mRNA upstream 1934 7554786 ~ 7573519 (-) False LOC110508494
XM_036967516.1 mRNA upstream 1934 7554786 ~ 7573519 (-) False LOC110508494
XM_036967525.1 mRNA upstream 1934 7554786 ~ 7573519 (-) False LOC110508494
XM_036967534.1 mRNA upstream 1934 7554786 ~ 7573519 (-) False LOC110508494
XM_036967545.1 mRNA upstream 1934 7554786 ~ 7573519 (-) False LOC110508494
TU252088 other downstream 21865 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 27690 7517200 ~ 7524492 (-) False LOC110508454
TU252080 other downstream 27690 7517200 ~ 7524492 (-) True LOC110508454
TU251959 other downstream 116011 7428670 ~ 7436171 (-) False LOC110520792
TU252033 other upstream 3535 7556387 ~ 7558636 (-) False LOC110508494
TU252035 other upstream 6087 7558939 ~ 7573472 (-) True LOC110508494
TU253177 other upstream 796467 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 841509 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 950332 8503184 ~ 8523208 (-) True G221807

Expression Profile