RNA id: TU251665


Basic Information

Item Value
RNA id TU251665
length 3019
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G220549
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7577070 ~ 7580334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAGTGTAAATCCAGAAACTGCATTTTAAAGCCAAACTCACCAAGAAAGATTCATGACATATGCATTTATATGCAATCTGTGATTTCAGGTACAGGTGTAAACAGATGTATTTCCCCCCCAAAAGAACAAGAGCATTACAACAGAACTGTAAAAAGTACAAAATTAAATCAATATTTGTGAAGGCTAATTGAAAATAACCCTTTGGCTTTCAAAACTCAAATTAAAAAGTACATCAAAACAACAATATAGAAAGTGTAAAAACAATGATTTCCATGCAACAAAGGCAACTGTGATGAACAATGACAACGCTAGAATGTTTCACAAATTATGTAGAGGATAGATGATTCCTTTTACACACACACCTTGGGGCTTGCATACTTGTTTTCTTGTTGCCTATCCAGGACCTATAGTcacttaaacagtctgtgtctaaCACAGCTGTCCTTCCTGTGTGTTTGTGACAGAATGAAGCAAAGGCCTCACACACAGAGCACAAGTGCCACCATGTAAGAACTACACAACCCCCTACACTCCCAACCATAAACTCTGATCATCCACACATCCtctctcacaacacacacacaagcacgatGAGAAAGATGAATAAAACAATTACCTGTCCGGGTTCAGAGAGCCCTTTCTCATGACTAGAGTTGCAAAATTCAgataactttccccaaattccccggttttcCAGAAATATTTTGTACAGCAGGTGGCAGATCCCAGGTTACTCTTCACTTCCACATTTACAGTTTGGTTTCAGCCTCCCTCAAAAACCTGGACATGGTTCATTGGCTAGAATCAAAATGAATTGGATTCAGAGAGAAAAGTTTTCCGTGGGTATTACATGTGAAATACAGTATCTGGTTCTGTCCCACCCATGTTATTAATAACATCTAAACAATAAAGACTTTCATTTCAATGAGAGCTGCGACATCAAGCAACCGTGACAACAGGAAGTAAGAATGAATGTGCAATAGAGGAGCGGATTGGCATCACTGGACCTGGGTGGTGAGAGTCAGTGTCCTTTTTGCAGAGTCTTTGATGGACTGAGAGACCATGTGACAGGATCCAACAGTCCACTACATTTGGATTAAGTACATCAACTGACTGTACAATAAGCACAGTACATTAGGTGACAGGCTGCACTGGAGTGAGGTGACTGCATCGAAGAAACAAGGCACGAGTAAAAGATACAAAACATATcatgaagagaaggagggagaggatgattCCTCCACGTTCTCTCCCTCTACTATCTTCTAATTCCAAGGAAAACAACACGTCAAAGTCCAACATCTGACCAACGTTCGCGAAGCTCCCAGATTTTGTTGTGAACAGTGCTGATAACACAGTTTTCCCTGCAGTGAACTGAGAAGAATCATCACACACTAATGCttacgctaatgctaacgctaaaagCTAATCTCCTGACCAAGTGTTGCAGCACATTTGGAGAGGAGATAAAATCTATGCTTTGAATGCTCTGGACCGAACGCTTTCGGCATTAAACACACTTCATCCAGTATGCCCCCcaacccctccaccccccacccaTCCAGACAGAGACATGGCCATAGATTGTCAAGGCAAGCAGATATTAACAACAAATCCATTGAAAAGCAAGAAAATATTGGCATTAATCCGAACTACGATTCCAACACAGCACCGATTAAATTGTGACAGTCGCATTTGGGTTGACTGTGACATCGTCCTAGAATTGGTTTTGAACTCTTTCAGATGACATCGTGTCTAGGTCTGATGACATCTCTAGATGTGGAATCTCCCAATGAAAGTACATGACAGACAGACTAGCACACTGTATGTTGGTGTAGGAGTCATCTCCATGGTTTCTGCCGCCCCAGTCCAACCAAGTCCACTTTCTTTGTCATGATCAGGACAGAAAGGTAAGACCAGtcccatgcagacagacagggagaccagtcccatgcagacagacagggagaccagtcccatgcagacagacaggcggatGTCGGACATCCTTTTATCAAACTCCACCTTCAGAGGCCGGAAAGAAACCTTGTCCATAtttggacagacagagacaatggTTGTTGGTATAGCAACCCCCTTTTTGCATACAGAGACCGTGATATCACCAGGTATCACTCAGGGTCAATGGTCAAAGATGAAAGGTATTTTAATGGAAGTGGCTTGATGGTAAGCGAGGGCCCTGATTGGTGTGGACACAAAAATGTCAATGCATATTAACAGGAGGCCTGATCTCAGTCATGATTGGTTATTCATGTGTTCCACTGATATTTGATTGGCTGTTCCTGTGTTCCACTGATATTTGATTGGCTGTTCCTGTGTTCCACTGATATTTGATTGGCTCTCTGATGAGTCCAATCATCAGACAAGTCTTTGGAGTGCTTCTGTGACGGTGAGAGAAACTGTTTCCTCTGCCATGTCTGGATCAAGacctctccccccatccctccattcctttcTCTACGTTTCACTCCTCCCCTCCAAGGTGCATAGTCCTCTTTTACTATGATAGAATCATTCAGAAATGATACAATGGCATGATTTAATTAATAATGCTCAGTTTTTTTACTAAATTGTATTAATTTCTGTCCCAATGAGAAGGAAAATAAAATGTTCCTAGGTGTTACTCCCACGTTctttggagggatggagggagtggacCTCGATGACGGAAGGATGAACAGAAGTAGGGATCACTGAGGTAACAGTGAGTCGTccaggaggagagaagggtgtgAGGAAAAGCAGAGAGCAAATGATTTTGGCAGAAAGAGTGATAGAGGTGTTTTTTTGGCTTTCCTTAATGTTGTCAGCACTGCTTATGTGTGTAGTGtttctgagagtgtgtgtgtgttgcattgctgtgtgtgtgtgtgttcaggcccCGTGCTCCACTGGTTGTTGCAGACACACCTCACTGCCTGCTGATACGATGGGCAGTCTGTTGTCCATGTGGTAACTGATCAGGTGGCTCACACTCTCAAAGTGGTGGTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251682 lncRNA upstream 2839 7573889 ~ 7574231 (+) True G220565
TU251676 lncRNA upstream 19252 7557282 ~ 7557818 (+) True G220559
TU251664 lncRNA upstream 24222 7552160 ~ 7552848 (+) True G220548
TU251672 lncRNA upstream 31658 7545203 ~ 7545412 (+) True G220555
TU251661 lncRNA upstream 39927 7536660 ~ 7537143 (+) True G220545
TU251669 lncRNA downstream 20067 7600401 ~ 7605519 (+) True G220552
TU251694 lncRNA downstream 33329 7613663 ~ 7614792 (+) True G220575
TU251695 lncRNA downstream 36583 7616917 ~ 7617057 (+) True G220576
TU251699 lncRNA downstream 48930 7629264 ~ 7630255 (+) True G220578
TU251703 lncRNA downstream 53584 7633918 ~ 7634120 (+) True G220582
XM_036967459.1 mRNA upstream 76533 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 129188 7437011 ~ 7447882 (+) False LOC118945274
XM_021621583.2 mRNA upstream 219662 7348131 ~ 7357408 (+) False LOC110536044
XM_021589071.2 mRNA downstream 38034 7618368 ~ 7627967 (+) True LOC110508507
XM_036967633.1 mRNA downstream 360968 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 568073 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 590300 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 664894 8245228 ~ 8249653 (+) False LOC110520877
TU251574 other upstream 129193 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 195507 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 211785 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 211785 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 212624 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 590373 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 818737 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 818737 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 818737 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 1148643 8728977 ~ 8732478 (+) False G221514

Expression Profile