RNA id: TU252126


Basic Information

Item Value
RNA id TU252126
length 249
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G220938
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7643412 ~ 7643660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctagacccactccaatttgcataccaccccaacagatctacagattaTGCAATCGCTATTGCACACttgtgtgagaatgctattcattaactatagctcagcgttcaacaccatagtggccTCAAAGCTCAGCAATAAGCTAAGGACctagggactaaacacctctctctgcaactggatccaagacttcctgacgggctgcacCCAAGTGGTACAAGTAGATAACAACACACAcgccacgctgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252122 lncRNA downstream 7290 7635449 ~ 7636122 (-) True G220934
TU252121 lncRNA downstream 8605 7634316 ~ 7634807 (-) True G220933
TU252118 lncRNA downstream 12040 7631052 ~ 7631372 (-) True G220930
TU252117 lncRNA downstream 13335 7629355 ~ 7630077 (-) True G220929
TU252106 lncRNA downstream 51525 7589527 ~ 7591887 (-) True G220922
TU252127 lncRNA upstream 1086 7644746 ~ 7645280 (-) True G220939
TU252128 lncRNA upstream 2369 7646029 ~ 7646314 (-) True G220940
TU252129 lncRNA upstream 3322 7646982 ~ 7647321 (-) True G220941
TU252130 lncRNA upstream 5086 7648746 ~ 7649072 (-) True G220942
TU252136 lncRNA upstream 12397 7656057 ~ 7656318 (-) True G220948
XM_036967568.1 mRNA downstream 26219 7577008 ~ 7617193 (-) True LOC110520788
XM_036967579.1 mRNA downstream 26228 7577008 ~ 7617184 (-) False LOC110520788
XM_036967584.1 mRNA downstream 26228 7577008 ~ 7617184 (-) False LOC110520788
XM_036967574.1 mRNA downstream 36797 7577008 ~ 7606615 (-) False LOC110520788
XM_021589059.2 mRNA downstream 67798 7573853 ~ 7575614 (-) True LOC110508498
XM_036967618.1 mRNA upstream 100698 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA upstream 102577 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967607.1 mRNA upstream 102577 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967678.1 mRNA upstream 570932 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 823276 8466936 ~ 8494991 (-) False LOC110520844
TU252035 other downstream 69940 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 84776 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 113095 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 118920 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 705659 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 750701 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 859524 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 1119459 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 1161037 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile