RNA id: TU252129


Basic Information

Item Value
RNA id TU252129
length 340
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G220941
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7646982 ~ 7647321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttagttgtcactgtattagactcagcataggtgattagatgatgttgaaatgcTCCTGTTTTTTTTGCGACTTGCGataactctgtggttctaaatcaatagttgtttagtggtccggaaatgtcagaaacattaacttgcttgaccatgctgtaggggaaagggggatacctagtcaattgtacaactgaatgcattcaactgaaatgtgtcttccacatttaacacaatccctctgaatcagagaggtgcagggggctgccttaatcgacatcaacGTCTTCAGCACCtggggagcagtgggttaactgccttgctcaggggtagaaaggcagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252128 lncRNA downstream 668 7646029 ~ 7646314 (-) True G220940
TU252127 lncRNA downstream 1702 7644746 ~ 7645280 (-) True G220939
TU252126 lncRNA downstream 3322 7643412 ~ 7643660 (-) True G220938
TU252122 lncRNA downstream 10860 7635449 ~ 7636122 (-) True G220934
TU252121 lncRNA downstream 12175 7634316 ~ 7634807 (-) True G220933
TU252130 lncRNA upstream 1425 7648746 ~ 7649072 (-) True G220942
TU252136 lncRNA upstream 8736 7656057 ~ 7656318 (-) True G220948
TU252145 lncRNA upstream 27384 7674705 ~ 7741276 (-) True G220956
TU252177 lncRNA upstream 70047 7717368 ~ 7824592 (-) True G220986
TU252150 lncRNA upstream 98991 7746312 ~ 7770881 (-) True si:dkey-246i14.3
XM_036967568.1 mRNA downstream 29789 7577008 ~ 7617193 (-) True LOC110520788
XM_036967579.1 mRNA downstream 29798 7577008 ~ 7617184 (-) False LOC110520788
XM_036967584.1 mRNA downstream 29798 7577008 ~ 7617184 (-) False LOC110520788
XM_036967574.1 mRNA downstream 40367 7577008 ~ 7606615 (-) False LOC110520788
XM_021589059.2 mRNA downstream 71368 7573853 ~ 7575614 (-) True LOC110508498
XM_036967618.1 mRNA upstream 97037 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA upstream 98916 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967607.1 mRNA upstream 98916 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967678.1 mRNA upstream 567271 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 819615 8466936 ~ 8494991 (-) False LOC110520844
TU252035 other downstream 73510 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 88346 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 116665 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 122490 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 701998 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 747040 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 855863 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 1115798 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 1157376 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile