RNA id: TCONS_00029138


Basic Information

Item Value
RNA id TCONS_00029138
length 1679
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_014739
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 22622355 ~ 22664398 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agttttttaaacGCTCTTCTTATTTTCAAAATGGCGGAGTACGATCTGACTACCAGAATCGCTCATTTTTTAGACAGGCATTTGGTCTTTCCGTTGCTGGAATTCCTTTCGGTCAAAGAGATCTACAATGAGAAAGAACTTCTCCAAGGGAAGCTGGATCTTCTCAGCGAAACAAACATGGTGGACTTTGCAATGGATGTATATAAGAACCTCTATCCTGACAAAGAAATTCCACACTCCTTGAGGGACAAAAGAACCACAGTGGTGGCCCAGCTAAAGCAGCTCCAGTCTGAAACGGAACCCATAGTGAAGATGTTTGAAGATCCAGAGACTCAGAGACAGATGCAGTCCACCAGAGATGGAAGGATGCTGTTTGAATATTTAGCAGACAAACATAGTTTTCGTCAGGAATATTTGGATACACTTTACCGCTATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGAGCTGCAGAGTATCTCTACTTTTTCCGCGTGCTTGTTCCCTCCACAGACAGGAATGCTCTGAGCTCTCTGTGGGGCAAACTGGCATCGGAAATCCTCATGCAGAATTGGGAAGCAGCCATGGAGGACCTGACCCGCTTACGAGAGACCATCGACAACAACTCACTGCAGCAGAGGACGTGGCTCATACACTGGTCACTGTTTGTCTTCTTTAATCATCCCAAAGGCAGAGACAACATCATCGAGCTCTTCCTCTATCAGCCCCAGTACCTAAATGCAATTCAGACCATGTGCCCCCACATTCTCCGCTACCTGTCCACAGCTGTCATCACCAACAAGGATGTGAGAAAACGGCGACAGGTTCTCAAAGACCTGGTCAAAGTCATCCAACAGGAGTCATACACGTACAAGGATCCCATCACCGAGTTTGTGGAGTGTCTCTACGTTAACTTTGATTTTGACAGCGCGCAGAGAAAACTAAGGGAATGTGAGTCGGTGCTGGTAAATGACTTCTTCCTGGTTGCTTGCTTGGAGGACTTCATTGAAAACGCTCGGCTGTTCATCTTTGAGACGTTCTGCCGAATCCATCAGTGCATCAGCATCAGCATGTTGGCAGATAAGCTGAATATGACCCCTGAGGAGGCCGAGAGATGGATCGTAAACTTAATCCGCAATGCCAGACTGGATGCCAAAATCGACTCCAAACTGGGTCATGTGGTGATGGGCAACAACGCAGTGTCGCCGTATCAGCAGGTGATCGAGAAGACCAAGAGCCTGTCGTTCCGCAGTCAGATGTTGGCCATGAATATCGAGAAGAAGATCAGCCACAGCAACAGAAATGAGACACCGAACTGGGCGGCTCAAGACACGGGATTCTATTAAGACTGGAATCAAGTCAAACAGTGGATCATCTGTTATTCTCCTCGACTTCATCTTAGTATTTAACTAACTTTCTTTTATCTAGCCATGTTTTATAATAGGATCATTTTAAGAAAGACTGTTGCAGACATTTTCGGCACTGCGGAGCTGTGGATTTCTGAGAGCTTGCCATAGAGTTTTATGCATTCTGTATGAAGGAAAGGATTTACCAGGCAagattttattaactttttttcagTTCGGTGTGTTCTCGAATTCATTGTTTGAATATCATAACACCAGAATAAACAATGAGAATGTGCTTCTGAATGCATTTTCTAGGTCCTACAAAG

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-283 Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).

Ensembl:

ensembl_id ENSDART00000136295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030216 lncRNA downstream 562214 22059711 ~ 22062054 (-) True XLOC_014734
TCONS_00030215 lncRNA downstream 584766 22034197 ~ 22039502 (-) True XLOC_014733
TCONS_00029119 lncRNA downstream 791767 21825823 ~ 21832501 (-) True XLOC_014732
TCONS_00030214 lncRNA downstream 1257076 21362921 ~ 21367192 (-) False XLOC_014730
TCONS_00030218 lncRNA upstream 301658 22965786 ~ 22969561 (-) False XLOC_014742
TCONS_00030217 lncRNA upstream 301658 22965786 ~ 22969561 (-) True XLOC_014742
TCONS_00029774 lncRNA upstream 387850 23051978 ~ 23052426 (-) False XLOC_014747
TCONS_00030219 lncRNA upstream 621066 23285194 ~ 23288120 (-) True XLOC_014754
TCONS_00030220 lncRNA upstream 641034 23305162 ~ 23305720 (-) True XLOC_014755
TCONS_00029134 mRNA downstream 2277 22410377 ~ 22621991 (-) False XLOC_014738
TCONS_00029133 mRNA downstream 13716 22410377 ~ 22610552 (-) False XLOC_014738
TCONS_00029132 mRNA downstream 33590 22410377 ~ 22590678 (-) False XLOC_014738
TCONS_00029131 mRNA downstream 56065 22410377 ~ 22568203 (-) False XLOC_014738
TCONS_00029130 mRNA downstream 82616 22410377 ~ 22541652 (-) False XLOC_014738
TCONS_00029143 mRNA upstream 94988 22759116 ~ 22843480 (-) True XLOC_014741
TCONS_00029153 mRNA upstream 472042 23136170 ~ 23249822 (-) False XLOC_014752
TCONS_00029154 mRNA upstream 472821 23136949 ~ 23227582 (-) True XLOC_014752
TCONS_00029156 mRNA upstream 703873 23368001 ~ 23369282 (-) False XLOC_014756
TCONS_00029157 mRNA upstream 717203 23381331 ~ 23382619 (-) True XLOC_014757
TCONS_00029100 other downstream 1507725 21116411 ~ 21116543 (-) True XLOC_014728
TCONS_00029097 other downstream 2185008 20439142 ~ 20439260 (-) True XLOC_014725
TCONS_00029085 other downstream 2354127 20251672 ~ 20270141 (-) False XLOC_014721
TCONS_00029077 other downstream 2475819 20143850 ~ 20148449 (-) False XLOC_014717
TCONS_00029070 other downstream 2762756 19822162 ~ 19861512 (-) True XLOC_014710
TCONS_00029144 other upstream 378358 23042486 ~ 23042956 (-) True XLOC_014743
TCONS_00029145 other upstream 382672 23046800 ~ 23047282 (-) True XLOC_014744
TCONS_00029146 other upstream 383789 23047917 ~ 23048219 (-) True XLOC_014745
TCONS_00029147 other upstream 386649 23050777 ~ 23051016 (-) True XLOC_014746
TCONS_00029148 other upstream 387850 23051978 ~ 23052463 (-) True XLOC_014747

Expression Profile

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