RNA id: TU251811



Basic Information


Item Value
RNA id TU251811
length 347
lncRNA type intronic
GC content 0.38
exon number 2
gene id G220679
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7806721 ~ 7807143 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatcaatattggctaaatataagcGAAGATCATTTTTTTTGTAGAGTTGTTTATGAAAATAATGTTGACAAACGTtaccttatcctagtgagatttacacgGGTACCAAAACGCAGAGgaggTTTAAACCTGCactaaacacagaccttattggaagtagatcaagacattctctatggaagacatgaacagaggtggtttaagcctgaacgaaacacagaccttatctgaagtagatcaagacattctctatggaagacatgaacagaggaggTTTAAACctgaacgaaacacagaccttatctgaagtagatcaagacattctctatggaagacatgaacagagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251799 lncRNA upstream 21247 7784512 ~ 7785474 (+) True G220668
TU251771 lncRNA upstream 49007 7748346 ~ 7757714 (+) True G220645
TU251772 lncRNA upstream 54126 7751502 ~ 7752595 (+) True G220646
TU251723 lncRNA upstream 59896 7663177 ~ 7746825 (+) False G220600
TU251721 lncRNA upstream 59896 7684871 ~ 7746825 (+) True G220600
TU251813 lncRNA downstream 165 7807308 ~ 7807663 (+) True G220680
TU252277 lncRNA downstream 43495 7850638 ~ 7850852 (+) True G221077
TU252346 lncRNA downstream 123854 7930997 ~ 7934358 (+) True G221141
TU252365 lncRNA downstream 279524 8086667 ~ 8087262 (+) True G221153
TU252467 lncRNA downstream 312486 8119629 ~ 8120076 (+) True G221242
XM_021589071.2 mRNA upstream 178754 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 306184 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 358839 7437011 ~ 7447882 (+) False LOC118945274
XM_021621592.2 mRNA upstream 449313 7348143 ~ 7357408 (+) False LOC110536044
XM_036967633.1 mRNA downstream 134159 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 341264 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 363491 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 438085 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 438085 8245228 ~ 8249653 (+) True LOC110520877
TU251574 other upstream 358844 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 425158 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 441436 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 441436 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 442275 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 363564 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 591928 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 591928 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 591928 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 921834 8728977 ~ 8732478 (+) False G221514

Expression Profile