RNA id: TU252277



Basic Information


Item Value
RNA id TU252277
length 215
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G221077
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7850638 ~ 7850852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agggaaaataaataagcataaatatgggttgtatttacaatggtgtttgttcttcactggttgcccttttctcgtggcaacaggtcacaaatcttgctgctgtgatggcacactgtggaatttcacccagtagatatgggagtttatcaaaattggatttgttttcgaattctttgtggatctgtgtaatctgagggaaatatgtctctctaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251813 lncRNA upstream 42975 7807308 ~ 7807663 (+) True G220680
TU251811 lncRNA upstream 43495 7806721 ~ 7807143 (+) True G220679
TU251799 lncRNA upstream 65164 7784512 ~ 7785474 (+) True G220668
TU251771 lncRNA upstream 92924 7748346 ~ 7757714 (+) True G220645
TU251772 lncRNA upstream 98043 7751502 ~ 7752595 (+) True G220646
TU252346 lncRNA downstream 80145 7930997 ~ 7934358 (+) True G221141
TU252365 lncRNA downstream 235815 8086667 ~ 8087262 (+) True G221153
TU252467 lncRNA downstream 268777 8119629 ~ 8120076 (+) True G221242
TU252494 lncRNA downstream 312442 8163294 ~ 8164016 (+) True G221262
TU252486 lncRNA downstream 321111 8171963 ~ 8172223 (+) False LOC110520790
XM_021589071.2 mRNA upstream 222671 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 350101 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 402756 7437011 ~ 7447882 (+) False LOC118945274
XM_021621592.2 mRNA upstream 493230 7348143 ~ 7357408 (+) False LOC110536044
XM_036967633.1 mRNA downstream 90450 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 297555 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 319782 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 394376 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 394376 8245228 ~ 8249653 (+) True LOC110520877
TU251574 other upstream 402761 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 469075 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 485353 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 485353 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 486192 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 319855 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 548219 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 548219 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 548219 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 878125 8728977 ~ 8732478 (+) False G221514

Expression Profile