RNA id: TU252289



Basic Information


Item Value
RNA id TU252289
length 280
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G221089
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7870236 ~ 7870515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTtcatctacctcacttgctttggcactgttaacacgtttcccatgccaataaagcccttgaattgaattgaattgagacagagagagagagacagagagagagagacagagagagagagagacagagagagagagacagagagagagacagagagagagagacatagagagagagacagagagacagagagagagagagacagagagagagagagacagaaggacagaccaTTATTTAGATCCGTCCGCGTGTCGAATCTACTGTTCCATCTGACTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252286 lncRNA downstream 7556 7862431 ~ 7862680 (-) True G221086
TU252276 lncRNA downstream 19776 7850253 ~ 7850460 (-) True G221076
TU252273 lncRNA downstream 21164 7848871 ~ 7849072 (-) True G221073
TU252265 lncRNA downstream 30956 7838655 ~ 7839280 (-) True G221065
TU252256 lncRNA downstream 41330 7827521 ~ 7828906 (-) True G221056
TU252291 lncRNA upstream 1436 7871951 ~ 7872157 (-) True G221091
TU252331 lncRNA upstream 33034 7903549 ~ 7903980 (-) True G221128
TU252336 lncRNA upstream 39039 7909554 ~ 7910153 (-) True G221132
TU252355 lncRNA upstream 67028 7937543 ~ 7937827 (-) True G221148
TU252991 lncRNA upstream 216152 8086667 ~ 8087253 (-) False G221642
XM_036967607.1 mRNA downstream 29761 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 29762 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 29763 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 253043 7577008 ~ 7617193 (-) True LOC110520788
XM_036967584.1 mRNA downstream 253052 7577008 ~ 7617184 (-) False LOC110520788
XM_036967678.1 mRNA upstream 344077 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 596421 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 596421 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 828520 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 828520 8699035 ~ 8703263 (-) False LOC110520892
TU252035 other downstream 296764 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 311600 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 339919 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 345744 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 478804 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 523846 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 632669 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 892604 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 934182 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile