RNA id: TU252346


Basic Information

Item Value
RNA id TU252346
length 1322
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G221141
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 7930997 ~ 7934358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggaagcaatgagtgtgaaagacagaatgagacagacagaatgagacagaggagaagagatgagtgtgtcagacagaatgagacagacagaatgagacagagagggaaagagatgagtgtgacagagagaatgagacagagaggggaagagatgagtgtgacagacagaatgagacagacagaatgagacagagaggggaagagatgagtgtgaaagacagaatgagacagaggagacgagatgagtgtgacagacagaatgagacagaggagaagagatgagtgtgacagacagaatgagagagaggagaagagatgagtgtgacagacagaatgagacagacagaatgagacagagaggggaagagatgaatgtgaaagacagaatgagacagacagaatgagacagaggggaagagatgagtgtgaaagacagaatgagacagacagaatgagacagagaggggaagagatgagtgtgaaagacagaatgagacagaggagacgagatgagtgtgacagacagaatgagacagaggagaagagatgagtgtgacagacagaatgagagagaggagaagagatgagtgtgacagacagaatgagacagacagaatgagacagagaggggaagagatgagtgtgacagacagaatgagacagacagaatgagacagaggagaggagttgagtgtgacagacagaatgagacagaggggaagagatgagtgtgaaagacaaaatgagacagacagaatgatacagagaggggaagagatgagtgtgacagacagaatgagacagacagaatgagacagaggatgGAAGAGATgattgtgacagacagaatgagacaaagaggggaagagatgagtgtgacagacagaatgagacagagagaggaagcgatgagtgtgaaagacagaatgagacagacagaatgagacagaggagaagagatgagtgtgtcagacagaatgagacagacagaatgagacagagagggaaagagatgagtgtgacagacagaatgagacagagaggggaagagatgagtgtgacagacagaatgagacagacagaattagacagagaggggaagagatgagtgtgaaatACAGAATgacacagacagaatgagactgaggagaagagatgagtgtgtcagacagaatgagacagacagaataagacagagagggaaagggatgagtgtgacagacagaatgagacagagaggggaagagatgagcgcgtcagacagaatgagacagacagaatgagacagagagggaaagagatgagtgtgacagacagaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252277 lncRNA upstream 80145 7850638 ~ 7850852 (+) True G221077
TU251813 lncRNA upstream 123334 7807308 ~ 7807663 (+) True G220680
TU251811 lncRNA upstream 123854 7806721 ~ 7807143 (+) True G220679
TU251799 lncRNA upstream 145523 7784512 ~ 7785474 (+) True G220668
TU251771 lncRNA upstream 173283 7748346 ~ 7757714 (+) True G220645
TU252365 lncRNA downstream 152309 8086667 ~ 8087262 (+) True G221153
TU252467 lncRNA downstream 185271 8119629 ~ 8120076 (+) True G221242
TU252494 lncRNA downstream 228936 8163294 ~ 8164016 (+) True G221262
TU252486 lncRNA downstream 237605 8171963 ~ 8172223 (+) False LOC110520790
TU252489 lncRNA downstream 241359 8175717 ~ 8178058 (+) True LOC110520790
XM_021589071.2 mRNA upstream 303030 7618368 ~ 7627967 (+) True LOC110508507
XM_036967459.1 mRNA upstream 430460 7460440 ~ 7500537 (+) True LOC110508431
XM_036967452.1 mRNA upstream 483115 7437011 ~ 7447882 (+) False LOC118945274
XM_021621592.2 mRNA upstream 573589 7348143 ~ 7357408 (+) False LOC110536044
XM_036967633.1 mRNA downstream 6944 7941302 ~ 8086452 (+) True LOC110513974
XM_036967642.1 mRNA downstream 214049 8148407 ~ 8159396 (+) True efna1b
XM_036967655.1 mRNA downstream 236276 8170634 ~ 8176258 (+) False LOC110520790
XM_021598321.2 mRNA downstream 310870 8245228 ~ 8249653 (+) False LOC110520877
XM_021598322.2 mRNA downstream 310870 8245228 ~ 8249653 (+) True LOC110520877
TU251574 other upstream 483120 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 549434 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 565712 7363298 ~ 7365285 (+) False G220435
TU251521 other upstream 565712 7363298 ~ 7365285 (+) True G220435
TU251514 other upstream 566551 7363298 ~ 7364446 (+) False G220435
TU252485 other downstream 236349 8170707 ~ 8172223 (+) False LOC110520790
TU252560 other downstream 464713 8399071 ~ 8489067 (+) False G221299
TU252562 other downstream 464713 8399071 ~ 8489067 (+) False G221299
TU252563 other downstream 464713 8399071 ~ 8411530 (+) True G221299
TU252829 other downstream 794619 8728977 ~ 8732478 (+) False G221514

Expression Profile