RNA id: TU253065


Basic Information

Item Value
RNA id TU253065
length 2463
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G221707
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8175399 ~ 8183561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacgacCCAAATAAAAACACAACGTGCACATGCACACGAAGACATACGACCCAAATAAAAACTTTGTGTATGAAACACAATACGAATGGAATTCTTAGTCTTCCCTCAGTTCATGGATTTAGAGACCAAGTACCGATGATGTAGAGTACATGCCATGTCTGCTTAGAGTAGGGAAAGGGTTGCAAAACtccaggaactttcaataaattccctggttttccagaaatcctggttggagggcTCCAGATTTCCTTCTTATTCCCTTCAGATTCTGTGAATCCCCCAACCGGGATGTCTGGAAAAACAAGTTCCTGGAGTTTGGCAACCCTAGTAGGGATGGACAACAGAGGGCTCTACACCCCAGCTACAACTAGTACTACTAGGAGCACACAGTCCTGCCTCTTCATCTCTCCGTGGTACTTAACTGATCCATTCATATAACTGATTAACTAGCGAGTCTAGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTGACCTTAGACGTCTGGTTATCCAGGTattcagtgctttcagaaagtattatttagcctcattctaaaatggattttaaaaataaaataatcatcCTCACCAATCTTAAACAATAGCCAATgatgacagagagaaaacaggtttATATACATTTCTGCAAAtctataaaaaaaacagaaatacctttatttacataagtattcagaccctttgcgatgagactcgaaattgagctcaggtgcatcctgtttccattgatccggtttccatccttgagatgtttctacaacttgattggactccatctgctgtaaattcaattgattggacataatttggaaatgcacacacctgtctatataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagacatgaggtcaaaggaattgtccatagagctccgagacaggattgtgaagaggaacagatctggggaaaggtacaaaaacatttctgcagcattgaaggtccaagaacacagtggcctccatcgttcttaaagtgaagaagtttggaaccagcaagactcttcctagagctgcgcccggacaaattgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacactgacagagctcctctgtggagatgggagaaccttccagaaggacaaccatctctgcaacattcCACTAATCActcctttatgatagagtggctagacagaagccactcctggcctgaatgccaagcatcatatctggatgaaacctggcaccatccctgaggtgaagcatggtggtggcagcatcaggcggtggggatgtttttcagcggcagggactaggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacctgcaccagagtgctcaggacctccgactggggcaaaggttcacctcccaacaggataatgaccctaagcacacagccaagacaaggctggacttgaacccggtctaacatctctggagagacctgaaaatagttgtgtagCAACGTTCCCATCCTacctgacagagtttgaaaggatctgcagagaagaatgggagaaactccccaaatacagatgtgccaagctcgtagtgtcatacccaagaagactcgaggctgtaatcgctaccaaaggtgcttcaacaaagtactgagtaaagggtctgaataattatgtaaatctgatatttccattttataaatgtacaaaataaaaacaattaaacctctttgctttgtcattatgggatattgtgtgtagattgatgaggaaaagaaacaatttaatacattttagaataacgtaacaaaatgtggaaaaactcgaggagtctgaaaactttccaaatgcactgtacgtcTAGTTAAAAGAGAAGGATAACAACCCAGCAGATACTGTGGCTACCAGGAACAGTTGTTCACCCCTAGTTCACAGGGTACCATAGTGATGAGGACAGACAAGTCAACTATAAAGGTGAGGGGTTCTCAAACCCCACTAGAGGCGGGATCATCCTGCCCTGTTAGTTAGAGCGATTCAACCAATAGCAGCGCATTGATGCTGAGCAAAAAACCTCCCACTGGGTAACAGAGACTGCTGTGATTGACAGGGCAGGACTGTCCCACCCATGGTTGAGTTCTCAGTAATGATGTCCCAGACTAGTACAGAAGGCACAAAAAGGAAGTGGTGGAGGGAGAAAGACGAGGAAGATGCCCCtaaccactgatacagggtcagatattTATTCATCATTTTTCATCCCCCCATTGCTAGGGTactctgatcctagatctgtgattAGGGACAGCTTCTGCCTTGAGAGGAGAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253056 lncRNA downstream 8860 8166259 ~ 8166792 (-) True G221702
TU253055 lncRNA downstream 10879 8164457 ~ 8164773 (-) True G221701
TU253017 lncRNA downstream 58951 8115184 ~ 8116701 (-) True G221667
TU252991 lncRNA downstream 88399 8086667 ~ 8087253 (-) False G221642
TU253066 lncRNA upstream 583 8178723 ~ 8184216 (-) True G221708
TU253049 lncRNA upstream 33501 8211641 ~ 8214242 (-) True G221696
TU253051 lncRNA upstream 36192 8214332 ~ 8215315 (-) True LOC110520794
TU253084 lncRNA upstream 46860 8225000 ~ 8225310 (-) True G221719
TU253085 lncRNA upstream 75094 8253234 ~ 8254089 (-) False G221720
XM_036967607.1 mRNA downstream 335177 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 335178 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 335179 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 558459 7577008 ~ 7617193 (-) True LOC110520788
XM_036967584.1 mRNA downstream 558468 7577008 ~ 7617184 (-) False LOC110520788
XM_036967678.1 mRNA upstream 36452 8214592 ~ 8243743 (-) False LOC110520794
XM_036967789.1 mRNA upstream 288796 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 288796 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 520895 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 520895 8699035 ~ 8703263 (-) False LOC110520892
TU252035 other downstream 602180 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 617016 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 645335 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 651160 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 171179 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 216221 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 325044 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 584979 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 626557 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile