RNA id: TU253085


Basic Information

Item Value
RNA id TU253085
length 506
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G221720
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8253234 ~ 8254152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAATATGGATCTGTAGACAAGCATGTGCTGAGTACATGGGGATGATGTAGGGAATGTAGAGACATGATTCAGGCTAGATCCCAAACTGCTTCCTTTCCTCCACCCCAGGCCTCATGACTGCTGAGAACAGTGTATGGATGGGCTGGGTAGGTCTCAGGTTATCTATACTGCTGAGAGGTGTCCAGTCCTTGGAGATCAGTGATCATAGAGTTAAGAAGTCAAGGAAAATATCTAAGAATGCTGGTTGGCTCGACCTACAAAAAGGAAACTGGGGTACACTGTCATTGGCTAACCTACACCATTTCTCCCTTGCCTGGTTAGCCGTTGTAGTGGATGCTGATTGGATGACGGTATTAGTGACTTAGTTCTTTTTCTTGCCCTTGCTGGCAGCCTTGGCTGGCATTACCGTGGGAACGGCTGCCTGGTACAGAGCAGCAGACACTTTGTTGATGTAGTAGAGGGCGAACAGAGAGAATATCAGACTGGAGAGAGAACAAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253084 lncRNA downstream 27924 8225000 ~ 8225310 (-) True G221719
TU253051 lncRNA downstream 37919 8214332 ~ 8215315 (-) True LOC110520794
TU253049 lncRNA downstream 38992 8211641 ~ 8214242 (-) True G221696
TU253066 lncRNA downstream 69018 8178723 ~ 8184216 (-) True G221708
TU253064 lncRNA downstream 69673 8175652 ~ 8183561 (-) False G221707
TU253115 lncRNA upstream 8061 8262150 ~ 8262373 (-) True G221734
TU253117 lncRNA upstream 10432 8264521 ~ 8264724 (-) True G221736
TU253123 lncRNA upstream 11376 8265465 ~ 8288604 (-) True G221738
TU253118 lncRNA upstream 12222 8266311 ~ 8331740 (-) False G221737
TU253119 lncRNA upstream 36313 8290402 ~ 8331740 (-) True G221737
XM_036967678.1 mRNA downstream 9491 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 412759 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 412760 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 412761 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 636041 7577008 ~ 7617193 (-) True LOC110520788
XM_036967789.1 mRNA upstream 212847 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 212847 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 444946 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 444946 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 447374 8701463 ~ 8701598 (-) True LOC118964373
TU252035 other downstream 679762 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 694598 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 722917 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 728742 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 95230 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 140272 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 249095 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 509030 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 550608 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile