RNA id: TU253115



Basic Information


Item Value
RNA id TU253115
length 224
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G221734
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8262150 ~ 8262373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCTATGTTGTCAAAGGAAGACCTAACCTCTCCCtgccaacatgtttcaagaagaccatcatagtccctgtgcccaagaacacctgcctaaatgactaccgacccgtagcactcacatctgtagccatgaagtgctttgaaaggctggcatggctcacatcaacaccattatcccagaaaccctagacccactccaatttgcctacagatccacagatgacgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253086 lncRNA downstream 7998 8253234 ~ 8254152 (-) False G221720
TU253089 lncRNA downstream 7998 8253234 ~ 8254152 (-) False G221720
TU253095 lncRNA downstream 7998 8253234 ~ 8254152 (-) False G221720
TU253097 lncRNA downstream 7998 8253234 ~ 8254152 (-) False G221720
TU253098 lncRNA downstream 7998 8253234 ~ 8254152 (-) True G221720
TU253117 lncRNA upstream 2148 8264521 ~ 8264724 (-) True G221736
TU253123 lncRNA upstream 3092 8265465 ~ 8288604 (-) True G221738
TU253118 lncRNA upstream 3938 8266311 ~ 8331740 (-) False G221737
TU253119 lncRNA upstream 28029 8290402 ~ 8331740 (-) True G221737
TU253178 lncRNA upstream 83310 8345683 ~ 8350289 (-) False G221788
XM_036967678.1 mRNA downstream 18407 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 421675 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 421676 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 421677 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 644957 7577008 ~ 7617193 (-) True LOC110520788
XM_036967789.1 mRNA upstream 204563 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 204563 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 436662 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 436662 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 439090 8701463 ~ 8701598 (-) True LOC118964373
TU252035 other downstream 688678 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 703514 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 731833 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 737658 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 86946 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 131988 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 240811 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 500746 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 542324 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile