RNA id: TU253123


Basic Information

Item Value
RNA id TU253123
length 260
lncRNA type read_through
GC content 0.39
exon number 2
gene id G221738
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8265465 ~ 8288604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACCTCTGTCATAGCTTGACCATGTGACACATCATCATAAGTGTGAAAGTTTGGGGAGATGGGGATGGAAAGGGGTGTGACAGGAGAGGAAAGGGTTTTGCAACAGTTCAGTGTAGAGAAATCATGCTGATGATAATTGGTGAGTAATGCCTATAAATGACATGAACCGGAGGAGGTCTAACAGAGTtctaaaacaaaaacattatagCCTACAAATGAAACATGAAAAGGTTTAGgtatagatagactacattatgtC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253117 lncRNA downstream 741 8264521 ~ 8264724 (-) True G221736
TU253115 lncRNA downstream 3092 8262150 ~ 8262373 (-) True G221734
TU253095 lncRNA downstream 11313 8253234 ~ 8254152 (-) False G221720
TU253119 lncRNA upstream 1798 8290402 ~ 8331740 (-) True G221737
TU253178 lncRNA upstream 57079 8345683 ~ 8350289 (-) False G221788
TU253182 lncRNA upstream 63588 8352192 ~ 8352678 (-) True G221792
TU253185 lncRNA upstream 69978 8358582 ~ 8363578 (-) True G221794
TU253212 lncRNA upstream 105757 8394361 ~ 8410809 (-) False G221806
XM_036967678.1 mRNA downstream 21722 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 424990 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 424991 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 424992 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 648272 7577008 ~ 7617193 (-) True LOC110520788
XM_036967789.1 mRNA upstream 178332 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 178332 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 410431 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 410431 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 412859 8701463 ~ 8701598 (-) True LOC118964373
TU252035 other downstream 691993 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 706829 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 735148 7528026 ~ 7530317 (-) True LOC110508472
TU252079 other downstream 740973 7517200 ~ 7524492 (-) False LOC110508454
TU253177 other upstream 60715 8349319 ~ 8350289 (-) True G221788
TU253206 other upstream 105757 8394361 ~ 8410809 (-) False G221806
TU253214 other upstream 214580 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 474515 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 516093 8804697 ~ 8817709 (-) False LOC110520835

Expression Profile