RNA id: TCONS_00030217


Basic Information

Item Value
RNA id TCONS_00030217
length 1528
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id XLOC_014742
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 22965786 ~ 22969561 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGAACAAGAGTGAATAAACAGGCAATATAATGAACACCAAGTTTGAAgagtgtatatatgtgtgaatggatttaaaaataactgtaaaatgtaactgttttaactattttaaataagtattaaatCATTTTTGGAGAGACAGAGACAAGGATGAGATTTTCTATTGTGTTGAGCATGCTatgaaatggagtttactttgaAAGGCTCTATGTGCAATTGACCGATGAAAAAATGCAGTTGACTTCTTGTACCTAAATTCACCAAGGCCTTTATTCCTGTGACAAACACCTGAAGCTCAACAGTGCTTTCCTCCAGAGGCATAACGGTCACCACACCCTGCAGTGTCTTCTCATTGGCCGAGTCAATGTAACCGCTGCTGTAGTAATAGACTCCAGGAGACGTGAAACGTTTGTCTGTCTCCGCTGCTGAAACTAATGCCATCATAGTCTGTGCTGCTGGGATTGGAAACACTGAAGACCCTGTAGCCCAAACCAGGCACAAAAGCTGGCTAAACCCAGAGCCGATGATAGTGATGGTGGTTCCTCCATACAGTGACCCCACAGATGGAGAGAAACCTGTCACCTCTAGGACATACTCTATGGTGGTATTTATGTCAGGACtggaaatgataaaaaaaaaaagattaatcatCAGTATTAATGTACAATTATAGTCACAGTTAAGGCTAGATTAACTAAACAGAGCAAAGTGCTGTGAGATCAGCAACTATCACATCTATTAGCGTGTCTTGATGACCATCTGGTTGCGAGGAAATTGAAGATTTTTCTCAATTTAATTGTTTATCTAAAAAgaaatctgaagaaaaaaaatccaagctTTTTTTATTGCCAAGTCTTAATGtagtaataatttattattgCCTTAACTTTACTTTCCTCTGTTAGTTAATCTGGCTCTTATGATATTACATCACATCTTCTGAAACTACAGCATGAACATTTTAATGAGTCTGTGTCCACTAAATGATTTTTTTACACCATTTgaggtctttttttttgtttgtaaggTTGTTTACAACAGAAATGCagcatttgttttagttttttttttataaaactgcaGCTGTGTGCTGAGACTTGTGTTGGCGTAACATGAGTCAGACATAATCAGATAACTTTTTTAGTTAActagtaaagtaatgcattactttttaataTGAAGAAGATTTTATGAATGCTTATGACAATCTTTCATTAAATGTCATTCATCAgttgttattttaattgtaaaggtgacattgtttgagatgtcattgttgtgacaacttgacataaacaaacatttttctctttgtcatgacaatTTGACATTATTGACAACTGTTGAGGTCATTATAAATGTGTCTAGTGGTACAACTTGAATttatcattaaaatgtcatttcaggagttcacacttagctgacgattgataataaagctttgTCTGAGGACTGCAGGGatagagccctgagcttataagatgcTCTAGCCCTAGGCTCCCTCCCATAAGCAGGGcaagaaggga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030216 lncRNA downstream 903732 22059711 ~ 22062054 (-) True XLOC_014734
TCONS_00030215 lncRNA downstream 926284 22034197 ~ 22039502 (-) True XLOC_014733
TCONS_00029119 lncRNA downstream 1133285 21825823 ~ 21832501 (-) True XLOC_014732
TCONS_00030214 lncRNA downstream 1598594 21362921 ~ 21367192 (-) False XLOC_014730
TCONS_00029774 lncRNA upstream 82417 23051978 ~ 23052426 (-) False XLOC_014747
TCONS_00030219 lncRNA upstream 315633 23285194 ~ 23288120 (-) True XLOC_014754
TCONS_00030220 lncRNA upstream 335601 23305162 ~ 23305720 (-) True XLOC_014755
TCONS_00030221 lncRNA upstream 399318 23368879 ~ 23369252 (-) True XLOC_014756
TCONS_00030222 lncRNA upstream 440454 23410015 ~ 23411861 (-) True XLOC_014758
TCONS_00029143 mRNA downstream 122306 22759116 ~ 22843480 (-) True XLOC_014741
TCONS_00029137 mRNA downstream 301388 22622355 ~ 22664398 (-) False XLOC_014739
TCONS_00029138 mRNA downstream 301658 22624268 ~ 22664128 (-) False XLOC_014739
TCONS_00029135 mRNA downstream 424502 22453441 ~ 22541284 (-) False XLOC_014738
TCONS_00029153 mRNA upstream 166609 23136170 ~ 23249822 (-) False XLOC_014752
TCONS_00029154 mRNA upstream 167388 23136949 ~ 23227582 (-) True XLOC_014752
TCONS_00029156 mRNA upstream 398440 23368001 ~ 23369282 (-) False XLOC_014756
TCONS_00029157 mRNA upstream 411770 23381331 ~ 23382619 (-) True XLOC_014757
TCONS_00029158 mRNA upstream 448517 23418078 ~ 23419342 (-) True XLOC_014759
TCONS_00029139 other downstream 301679 22624269 ~ 22664107 (-) False XLOC_014739
TCONS_00029141 other downstream 307436 22638164 ~ 22658350 (-) True XLOC_014739
TCONS_00029140 other downstream 316823 22624336 ~ 22648963 (-) False XLOC_014739
TCONS_00029142 other downstream 319487 22646182 ~ 22646299 (-) True XLOC_014740
TCONS_00029100 other downstream 1849243 21116411 ~ 21116543 (-) True XLOC_014728
TCONS_00029144 other upstream 72925 23042486 ~ 23042956 (-) True XLOC_014743
TCONS_00029145 other upstream 77239 23046800 ~ 23047282 (-) True XLOC_014744
TCONS_00029146 other upstream 78356 23047917 ~ 23048219 (-) True XLOC_014745
TCONS_00029147 other upstream 81216 23050777 ~ 23051016 (-) True XLOC_014746
TCONS_00029148 other upstream 82417 23051978 ~ 23052463 (-) True XLOC_014747

Expression Profile

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