RNA id: TU252562


Basic Information

Item Value
RNA id TU252562
length 1955
RNA type TUCP
GC content 0.44
exon number 6
gene id G221299
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8399071 ~ 8489067 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagagtggggtgtGGTAATCAATGTTTAAAACCAACagcccatccctctcttcctcactccctctctctctctttctctgactgtCCAACTCCTCGCACAACTTCGtcACCATGGCACAGGTCCAGCAGGGTATGGCATTGCTCATCTCAGCCTTCCACAAGTACTCTGGCAAGGAGGGCGACAAGACGACCCTGAGCAAGGGAGAACTCAAAGATCTGCTCAACGCTGAGCTTGGAGAGATGATGGGGAAAAACACTGACCAGGCAAAGGTTGACAAGATCTTCAAAGATCTGGACGCTAACTCAGATGGCAGTGTGGACTTCCAGGAGTATGTCACACTGGTGGCCTGCCTGACCATGATGTGCAATGAGTTCTTCACCAAGAAGTGAAACAGCTCCCCCTGCCCACTCTCCACAGAACAGCAGCTCTTGCTCCATGAGTGAATTCATGATAAGATTAGCAAGATCCTCAATGCAGGTTCAAAGGGACAGAGATGCAggtttacacacatacacagaaaaaGGGTTGGGTTGATTATACACaccacacatagacagacaggtgaaggacacagacactgacatggtcacacatacagacacataggCTACTAtctcagaggaagagaggaagagaggaagctcTTTGGTTTGTTTAAAGTGAGAAATGAAATAAACTATTTTAATATGTTTGGAAGAAAGCTGACTTATCAtttgtgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgcctGTGTATGTCCTAAATAGGATACAGCAAGCAACATGAATCAAACATGAACCTTTGTTTTCAGACACCTGGTGAAAtacagtgccttgcgaaagtactcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatgtaaaactgtatttttttgggaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtatcaatgcacctgcactgtgatagtctcagaggtccgtcaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagtgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccatagaacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatccacactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaaaatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252575 lncRNA upstream 70312 8283633 ~ 8328759 (+) True G221306
TU252574 lncRNA upstream 70467 8327201 ~ 8328604 (+) True LOC118945294
TU252580 lncRNA upstream 84181 8313830 ~ 8314890 (+) False LOC118945294
TU252457 lncRNA upstream 184830 8211659 ~ 8214241 (+) True G221232
TU252489 lncRNA upstream 221013 8175717 ~ 8178058 (+) True LOC110520790
TU252572 lncRNA downstream 12670 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 22712 8511779 ~ 8512379 (+) True G221406
TU252581 lncRNA downstream 26383 8515450 ~ 8518668 (+) True G221312
TU252737 lncRNA downstream 78610 8567677 ~ 8569484 (+) True G221439
TU252741 lncRNA downstream 84863 8573930 ~ 8574246 (+) False G221441
XM_021598332.2 mRNA upstream 48777 8345438 ~ 8350294 (+) True s100w
XM_036967704.1 mRNA upstream 67327 8329147 ~ 8331744 (+) True LOC118936617
XR_005040410.1 mRNA upstream 70846 8313790 ~ 8328225 (+) False LOC118945294
XM_021598335.2 mRNA upstream 108062 8287965 ~ 8291009 (+) True LOC110520887
XM_036967709.1 mRNA upstream 132400 8265281 ~ 8266671 (+) True LOC110520886
XM_036967801.1 mRNA downstream 10661 8499728 ~ 8523217 (+) False adar
XM_036967810.1 mRNA downstream 10661 8499728 ~ 8523217 (+) False adar
XM_036967813.1 mRNA downstream 10661 8499728 ~ 8523217 (+) False adar
XM_036967816.1 mRNA downstream 10661 8499728 ~ 8523217 (+) False adar
XM_036967808.1 mRNA downstream 12986 8502053 ~ 8523217 (+) True adar
TU252485 other upstream 226848 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 951194 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 1017508 7378258 ~ 7381563 (+) False G220445
TU251520 other upstream 1033786 7363298 ~ 7365285 (+) False G220435
TU252829 other downstream 239910 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 239910 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 272267 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 284980 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 351157 8840224 ~ 8908728 (+) False G221526