RNA id: TU253262


Basic Information

Item Value
RNA id TU253262
length 2972
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G221852
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8454161 ~ 8457481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATGTTTTCAATTTCATTTAAAATAATGTTACAATTCATTACAATAAGTCAATAAGTTAAATTACTAAATGACATCAGCTTTCATCCATTCAACCCTGTGTGGTTCTCTTCAGAttgttttattttctcatttgCTTCATTTGTCAGACAGGTGAAGATACTGTAGGATAAGAGAAGTTGCTTAATATCTTACTTAAATAAAGAGTTGAcgatgagagacagaggagtgtttgagagagagatatCGCAGATTACAGGGCGAGATAGCAGAGGCTTGATTGACAAGTGAAGCAGCCTATGGGAGTGAGACATGATGATCCATTGTGTAAACAGCCTAAGCCTGTTGGAGATTCAGGTCCCAAATCAAATCACTCACAGATACAGGAAAACCCATTGGTGTAGCGATGCCTGGAGAAGTGAGTACACCATCATTTTGCCAGAAAAATCTttcatagaaaaacaacaaatgCATGTTAAGCCCACATCAATGCTTATACCGCACAAGGAGACCATTTTTtaggtctgggaaaaatctaaAATACTATTTTGCGAGGGTCTAGTTGCCCTTTAAAATAATTAAGCAAAATACCATGTGGCTCGCAGTGTCTGTACTCtacaatgtaggcctacagtagagtacatgtgaTTGCAGAGTTTTCAAAAGAAATGCCCTCCAGATTGATACAAATCATAATTATATCTTGTAGGCCCAATTTgcagtcaacatttaaagatgcactatacAGAAAtagctccgccatttcctggttgctaaaattctaagtttgcctaatttcagtttgtgacaaaacaataGGTAATTGTACAGAGAGTCTTTGTACATTCTCAACCTCTATGATCTCGTTGGGTCGCCCAAatgtacatattgcagctttaattagGAAGTTTTCCTTGGGAAAGCATTTGGAAATGTTCATTCAAAACAGCACGATGACTGAATTGAGCACTGCAAAGAGCTGCTCCATGGGACAACCAGCTGCGGCTCTTACTGCCATGATATTCAGCTGAAACTTGGCTGTGTGCAGCGCACATGTGAATATAATACACGTGCTTTGcgattgtgtaggctactttctctattgtaccACATACTTGATACCATTTATaccaccactacactactttgatacggaTCAGTGGGAATTAAGAAGTGACTATACCCAATGTCCACTGAACAAAAAGTGGGTTTTGTgcatatttattttattgaacctttattgaaACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCGTATACCTCCGTGTAGCTCCTACTGCACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTGCACCACTGTTTAAACCTCTGTGGGGTTTGGGCGTATACCTCCGTGTAGCTCCTACTGCACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCATGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTGCACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGTGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCGGTAGCTCCTACTACACCACTGTTTAAACCTCTGTGGGGTTTAGGGCGTATACCTCCTGTAGGTTAACACTGCATTTAAAGATGTGTGTGGTGTTGCATCAGCATCCAATGATAACATCCACCAGatattgaatcaggtgtgttactgcTTGGCTGGGGCAAAAGCCTGCACCCACACCGGCCCTCTGTTAGAATACTGGCCAGCCCTGTTGTATAGGAACTGATCTAGTGTTTCTCAGTGGGAGGGAGACCCCTGCAGGTCGTTCTGAGCACTGCAGCGTCTTCAGATACACAAGGACCAATATATCAATTGAACCAAAGACTCACCTAAACCAACACCATAGACATATCCTACAGACTGACAATCACGATGTGTTTTCTAAAGCATCACACCTTTTCTCAAGAACAGAAAGACACAAAACATGTAAATCGAGATGCACTTTGAGTTCAGTGTTTTTACAACCCAGTATAAATACAGTCTTCATGAGACCCCACGGTTAGGCATCAGCAGAACAGAAAGCTTAGGCTAGGATAGAATGAATACAGATTGAGCTTAACGTGGTCAACATCTTACAGGGTTCTTTTTGTGCTATTCTGTCCAATGTCTGAAATGTCCACATTAAAaatgatagatatatatatatatctgttggTACACAAAACACACAGGTGAAGTAAACATGTTCCTTGTTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253244 lncRNA downstream 28044 8425678 ~ 8426117 (-) True G221835
TU253234 lncRNA downstream 40131 8413662 ~ 8414030 (-) True G221825
TU253203 lncRNA downstream 43352 8401050 ~ 8410809 (-) False G221806
TU253266 lncRNA upstream 4059 8461540 ~ 8464546 (-) True G221855
TU253274 lncRNA upstream 19975 8477456 ~ 8477826 (-) True G221863
TU253318 lncRNA upstream 110191 8567672 ~ 8570629 (-) False G221896
TU253319 lncRNA upstream 111095 8568576 ~ 8570629 (-) True G221896
TU253346 lncRNA upstream 151656 8609137 ~ 8611384 (-) True G221922
XM_036967678.1 mRNA downstream 210418 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 613686 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 613687 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 613688 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967568.1 mRNA downstream 836968 7577008 ~ 7617193 (-) True LOC110520788
XM_036967789.1 mRNA upstream 9455 8466936 ~ 8494991 (-) False LOC110520844
XM_036967794.1 mRNA upstream 9455 8466936 ~ 8495390 (-) True LOC110520844
XM_036967868.1 mRNA upstream 241554 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 241554 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 243982 8701463 ~ 8701598 (-) True LOC118964373
TU253206 other downstream 43352 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 103872 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 880689 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 895525 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 923844 7528026 ~ 7530317 (-) True LOC110508472
TU253214 other upstream 45703 8503184 ~ 8523208 (-) True G221807
TU253420 other upstream 305638 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 347216 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 360340 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 361203 8818684 ~ 8821067 (-) True LOC110520835

Expression Profile