RNA id: TU252687


Basic Information

Item Value
RNA id TU252687
length 413
lncRNA type intronic
GC content 0.51
exon number 2
gene id G221394
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8479302 ~ 8480109 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtCCGCCTAGGTTTGTGAAGGATTGTTACTCTGttggttgtgttttgtgtttgttttctcCAGACTGTTTGGTcttgtgtttgggctggtctgttTTATGTTTGTTTTCTCCAGACTGTTTGGTcttgtgtttgggctggtctgttTTATGTTTGTTTTCTCCAGACtgtttggtcctgtgtttgggctggtctgttttgtgtttgttttctccagactgtttggtcctgtgtttgggctggtcTGTTTGTTTCTCTGGACTGTTTGGTcttgtgtttgggctggtctgttTTATGTTTGTTTCTCTGGACTGTTTGGTcttgtgtttgggctggtctgttttatgtttgttttctctggactgtttggtcctgtgtttgggctggCCTGTTTTATGCGCCCTGTAttttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252648 lncRNA upstream 61498 8417120 ~ 8417804 (+) True LOC110520859
TU252575 lncRNA upstream 150543 8283633 ~ 8328759 (+) True G221306
TU252574 lncRNA upstream 150698 8327201 ~ 8328604 (+) True LOC118945294
TU252580 lncRNA upstream 164412 8313830 ~ 8314890 (+) False LOC118945294
TU252457 lncRNA upstream 265061 8211659 ~ 8214241 (+) True G221232
TU252572 lncRNA downstream 21628 8501737 ~ 8538421 (+) True G221303
TU252700 lncRNA downstream 31670 8511779 ~ 8512379 (+) True G221406
TU252581 lncRNA downstream 35341 8515450 ~ 8518668 (+) True G221312
TU252737 lncRNA downstream 87568 8567677 ~ 8569484 (+) True G221439
TU252741 lncRNA downstream 93821 8573930 ~ 8574246 (+) False G221441
XR_005040415.1 mRNA upstream 21810 8436285 ~ 8457492 (+) False LOC110520873
XR_005040417.1 mRNA upstream 21810 8436285 ~ 8457492 (+) False LOC110520873
XR_005040418.1 mRNA upstream 21810 8436285 ~ 8457492 (+) False LOC110520873
XR_005040419.1 mRNA upstream 21810 8436285 ~ 8457492 (+) False LOC110520873
XR_005040420.1 mRNA upstream 21810 8436285 ~ 8457492 (+) False LOC110520873
XM_036967801.1 mRNA downstream 19619 8499728 ~ 8523217 (+) False adar
XM_036967810.1 mRNA downstream 19619 8499728 ~ 8523217 (+) False adar
XM_036967813.1 mRNA downstream 19619 8499728 ~ 8523217 (+) False adar
XM_036967816.1 mRNA downstream 19619 8499728 ~ 8523217 (+) False adar
XM_036967808.1 mRNA downstream 21944 8502053 ~ 8523217 (+) True adar
TU252563 other upstream 67772 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 307079 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1031425 7446369 ~ 7447877 (+) True LOC118945274
TU251531 other upstream 1097739 7378258 ~ 7381563 (+) False G220445
TU251521 other upstream 1114017 7363298 ~ 7365285 (+) True G220435
TU252829 other downstream 248868 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 248868 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 281225 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 293938 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 360115 8840224 ~ 8908728 (+) False G221526

Expression Profile