RNA id: TU253214


Basic Information

Item Value
RNA id TU253214
length 5607
RNA type TUCP
GC content 0.54
exon number 15
gene id G221807
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8503184 ~ 8523208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAAAGCCGGTCTTTATAATCACTTAAAACTTGACAGAATTTCCATACATAATAAAACAAAATGCTTTCTGTCATCCATTTGATAAAACGTTTCAAAAAAATAGTTAATAGAAAATCAATTTTAGGCATGACTTACaaaatatatacataatatatacatatacatacacacacagagatatatacaTACCCTACACAAACATTGTTATTGCATATACATCTGTGTATTTATGTATTTGTATGTACATGATGTATATATTGCTTCACCCTTGAATGTATTTGATCAGACTGAactaaaacataaaaacaaacCAGTCTTTCTCCCTGTCCACATAAAACCTGCCGGCCACATTCTGGCCACGCTAGGAAGGACAAGAGTGCAAAGCCATCTCTTTTTTTTATCACAACTACGAGTAATCACTTATCCTAACCTGAACTTTGACCCCCCCTAACATGAATCCTAAAATGAGAACAAGTAGCTGATTTACTTGTTCTCAGCAGTTCTCAACGTCACCGTTGTCCTTTCTGACGTGGCCCTCGAGTGGCAACACCAAAAACCTCAAGAACAATAGCGATACACACCACATAGGACACAACAATAACAGAATAATTATGATCTAGGCTAGTTAGTCATCATCAAATCTATGTTACAGTCGAGAGTTATGGGATGGACCAGGCTGTGACCTGTAGACGTAGCCATAGCATTAACAACAGTGTAAAGGGGTGGGTTACTAGGTCGGGGAGTAGCTAAACGTTACAAGgctggtttatatatatataaagtgtgATCACTACTATCCATGCTCAGGCTGATAAGTACAGATTAAACTAGTCATGCGTGATTGAATGGCTGGCTGGCGAGTAGGACAGGGTCAGGTGTAGGGTGTCTGAACTAGAGAGACAGGGCTGTGTGCGTGAGGGCAGGGAGGGTTTGTCCTGTAGGTAAATGTGAGGATAGAGTGTCCTGGGGCTACTGTTACAGTGGAGCAGTAGTGCATGCTATGCAGCTCTGAATGTCACCACATCACAGTCATCATGCTTACTATCCCCctattctcccctctctttctatatTCTGTTGCTTTTGTGTAGCAGTAGcaaccccttctctctccatctctcttgctGCTGTCTGACCCTCACCCCTTGGGCTGGCCTGTtatccccttccctccctccatctcagtAACTCTGTCCTTTCCAATCTGTCTGACCTCTACCCCTTCTTTCCAGTACTTGCTGctagctcctctgtcctctcctcccttccccccctgtCCTCCAGGATCATGTCCTTCTATCCCTAGCcaaccctcccttctccctcctttctACATGGCCTGTGTGTACGCACTACTACCCCACTGGCTGCTGTTATAGTCAGTGGTTGTGCTTCCATagctattgttgttgttgtatccCTGGTTGCTATTAGCAACACTTCCTGCCCCTTGGCCATCGGAGGCCGCCGCTTCGTCAAAGCTCTTCTCCTCCAATGGCTTGCCAATCCAGGCACCGTAGCCATGGCTACCGAGCGCATCGAAGAACTGCTGCTTGGCGACCTGGAAGGACATGGCGGCCATCTTGGCTTGGGCGTAAGACGGGAGAGCCAGCAGGTCCTGGCGCCCGCACTGTTGGCATAACGACCGGAATTGACGGAAGATATTGGACTTGGAGACCCGCGACACGTCCAGTTTGGGGCTGGTGCTGCTATCTGGATGAGGGTGGATGAGGTCTGAGGGTCTGGTTCTAGTTGTGGTGCGGGGTGCGTACCCGTCCAGTTTGCCCTTGGTCCCATCCAGCACCTCCACAGTGATGTGGTCTGGCTGGCTCCAGTTCACGCTGGACTCCTTGGTCTTCCCTGTGTGACGCGTCGAGTCATACACACTCACCCTGCCCACctcggggtggttgagtgtGTAGGGAGCAGGTAGACTCTTGGAGAAGGCTTCGCCGTCTCTGGCCAATCGGCAGCAGACAGCACGTGTCAGGTGGCCATGGCTGTACAGGTAGCCCAGGGTGATTGAAGCCAGGTAGATAGGATGGAGGAAGTGGGAGAGCAGGGCTCCCTGCAGACCCAGGACGTTCCAGCGAAGGATCTTGTCGCTACAGCTCATGGTCCTCAGACGCTCGCCGTGCTGGATGCCGTCCCAGGTGGGCACGATGGTCGATGACTCTACCGGGATGGTGCCCTCACCATTCTCCACCTTGGTGCGCAGCTTGCCCTGCTTGGCGTTCTCAAACAGGGGCTGGTGGCCCTGGCCGTCCCCCGCGTCCTCGCTGCACGACTTATCAAACAACGCCCCGTCTCCGCACGGAGCAGTACTGATATAGAGGTGGAAGGTGGTGTCAGGTTTGATCCGGAGCTTGTTCTCCTCAGCTGGCTCAAATATGCTGTCCTCTGACCCTTCACAGTGCTTCAGCAACTCAGCATATAGAAAcCTGATAAATCCTCTCCTGGAGATGATTTCTGCGTGGCAGTCATTAACGGTGTCCCCTTTAAGACTCAGCTCCTCCCCTTTAACACAGCGATTTCctgttcccaGACTGACCACGGTCCCCAGCCCTTCCCCCCTCTTCATGACGATGGTGGCGAGGATCTTCCTTCCCAGAAGACTGTGCTGTATGCGTGTGGTGAGGGCGTTGAAGCGCTGGTGACTCAACATGGCGATCTGGTCATGGATTGTCCCACCACTCAGTGGCAGCTCTGCAGGGGTTAGTTCCCCGGTGCGGGCAGCCTTCTCTGCCTCTCCAATCAGAACCCTCAGAGCTGCATCAGCTGCTTCCTGTTTCCCTTGCTTCTTATTGGAAGCACAGACAGGAGGGAACCAGCGACCCCCTAGTTTAGCCTGGTAGGTAaacTTGGGCTCGTGCGGTGGTCCTGACTGCCCGACCAGTCGTATCTCTGCAGCGAAACCCCTGGCCCGGGCGTACTCCAGCAGACCTGACACAGCGTTGTTGTTTAGGTGGCTGATAAGGTCACCAACCCCCGCCTCGTGGGCAGAACGCAGCTCCTCCTCTGTCAGCGGGGGCAGGGAGGGGCAAGCGGGCATGAAGCCCCCTTCATCACCAGACAGACACAGGGGAAACTGGGGCTTGTTGAGCTGCAGTCTCCCGTCGGCCATTAACTCCTTGACTGCCTCCTCTGCAGCCAGCTGCCGGGCAGCCTTCTTACTGGGGGCTGAGCTCTCAGCACACAGGCTTTCCCCGATCTTCACCCTGAACATGAACCGTGGGTCGTGAGGTGGGCCCTCCTGTCCAGTGTTGATGAACTCAATGGGGTTTCCAGTGCGCTGACTGTACTCCATCAGCATGGACACGGGGTTCTTACCCCCCGGCAGGGAACGGGACAGGGCCTGGGGCGGACCCTCCACCACCtcAGGGACGTCAGAGGTGGGGTCCATGGCCTGGTCCACCCCTGCAGTGAGCCCCTCCTCAgcccctcccccctctatctcaCGCAGCAGAATCCTCAGGGTTGCTGCCGCAGCATCTTTCTTAGCCACCTTTTTATTAGATGCCTCAGCAACAGGAAACAACCTGCCGTCCAGCATGACCTGCATACGGAATCTGGGGTCATGTGAGGGCCCTGATTGGTCGAGGAGCAGGAACTCGCAATTGTGTCCCTGGTACTGGGCAAACTCCATCAGGCCGCTGACGGGGTTCTTGGCCCTCACCTCCTGGAGTTTGGCACGGAGGTTCTGAGGTGGGGGCGCTGCCAGGGAGACTGCTACTGTCCCCCCTCCATCCCGGCTGATGGCGTTGAGGAATTCGGGGATATCGTCGGTCGCCCACTGCCCTCCGTTCGACTCATCCTCCGCCTCAGCGTTGGCCTCTAGACACTCCAATCCGGGTGGCACCGCTTGGAATCCAGACCCCATTCCTTCGACCTTTGCAGGGGCGCTGCGCTCGGCCTTGAggctcctctccatcctctccctgcGATGGACAGATAGCTCCCAGATGTGAGGGGTCACCTCTGCGTTGCGGCTCACGTCGCCCTGCTTCTCCATGGCGTACAGGGTGGGGTTGACCTGCTTGGCGCCCCTCAGGCCCAGGTTCTTGGAGATCACCAGGGCCGTGGCCTCCCCTGCCTCCAGCAGATACTGCAGGATCAACTCCTTCTGATTACTGCCGCAGTCCGCCATGTCGCTCTCGTCAAGGTCTAGGTCAAGCTCTTCGTTACTGCTGCTGTTGATACTGGGTTGTTGGGTTTGGGACTGGGAATGTTGCCGATATGACTCAGATGGTTCTGAGGAAGAGGAGTGTGAATCAGATTCTACGTAGTAATCTTCCTCTTTGTCGCCCTCAGGACCCTGCGCTTCAATTTGCTGGATCTCAGCGTCGATGGCAACGTCCTCCTCCTTCACAGACAGGAAGTGAGAGCAATCTTCTTCTGAAGGCCTTTGCTGTGACTCCACTGGATGTTCCCTCGGTTGGGAACGTGGGCTTTCCGGATCAGAATCTCTACTTTCCGGTTCTTCCTGTGGTTCTACGTAGACAGTCCACTCCGGAGGACTTTCACCGTGTTTTGAAGCTTTCTTATCACGCTCGAGACCGTAAAGGGCCTGGTTGATAAACTTTTTGGGCAACCGCAGCGTTTTTGCCAAACACTTTGCTTGTAGCTTCTCACCGGGGCTCAAATCTGCCAAGGCTTGTAAAACTTGCTCTCGGATGTCAGGTGGCTGAAATGTAGGGACACTCTTGTTGTTTGAATTATTACTACTACCAACAGAAGCTTTGTCAAAGCTGTCGCCTCGGTCAACTCTTCCTCTGTAGGACCTCTCTCTGTCTAAGGATAAACTCTGAAAGCCTTCTGAGAAAGACGGCCCGTCAGCACAGTCTGCATGAAGGCTCCACTGTCTGTTGAAGCCTTGCTTTTGTGTTGAAGTCTGCTTCTGGTTCCAGAATCTAGGGCCGGTTGGTCCTCTAGGGGGTCCCTGACAGTGCGGGTACCCGAAGTCCCTACCGTTCCCTCTGCCTCGCTCGCTGctgtatccccctctccccctagAGCTGTTTTGGGAGTACCTGCTGTACCCTGCCTGGGTCTGGTTCGATTCGTTATAGAGTCCGTTCGGTCCCCCTCGACCCAAGCTCTGCGCCCCTCCTCTGGGGCTCACCCTAAACTGGGGAGCCTCAGTGTTCTGTCCCCTCAGGAAGTGGACCTGCTGCTGCCTGAAGGAGTTAGGACCACTGGGACAAGAGCTCTGCTGACTCAGGGCTGGGCTGTGACCGGgtgggggagggacagaggggtagagaggctgAGAGTGGGCACTGGGTGGTACTAGAGGGGGAACTGGGCCCAGGTATGAATGGACGTTTGGGTGTGGGGCCTGTTGCGGGGGGGCTCTGGGGTTAAATCCCAGGGGTCCAGCTCTGTAGTATTGATGCTTAGCCTGCAGTTGGGGGAGAGGGGGTCGGTGGTAATGCTCTATGGGGGGCCCTCCTCGTCCTCTGCTCATAGCGCAGGGGGCAGGTTGAGGGGGGACCAGGGCCGCCTGTTACGCAGCAgataggaggatgtgtctctgtgttggatACTGATGCAACAACACAGTCAGGCAGAACAACCGGGTGGGCGATGAACGCAAAGTGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253274 lncRNA downstream 25358 8477456 ~ 8477826 (-) True G221863
TU253266 lncRNA downstream 38638 8461540 ~ 8464546 (-) True G221855
TU253262 lncRNA downstream 45703 8454161 ~ 8457481 (-) True G221852
TU253244 lncRNA downstream 77067 8425678 ~ 8426117 (-) True G221835
TU253234 lncRNA downstream 89154 8413662 ~ 8414030 (-) True G221825
TU253318 lncRNA upstream 44464 8567672 ~ 8570629 (-) False G221896
TU253319 lncRNA upstream 45368 8568576 ~ 8570629 (-) True G221896
TU253346 lncRNA upstream 85929 8609137 ~ 8611384 (-) True G221922
TU253295 lncRNA upstream 105475 8628683 ~ 8630117 (-) False G221880
TU253296 lncRNA upstream 105475 8628683 ~ 8630117 (-) True G221880
XM_036967794.1 mRNA downstream 7794 8466936 ~ 8495390 (-) True LOC110520844
XM_036967789.1 mRNA downstream 8193 8466936 ~ 8494991 (-) False LOC110520844
XM_036967678.1 mRNA downstream 259441 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 662709 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 662710 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967868.1 mRNA upstream 175827 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 175827 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 178255 8701463 ~ 8701598 (-) True LOC118964373
XR_005051421.1 mRNA upstream 178675 8701883 ~ 8702017 (-) True LOC118964372
XM_036967924.1 mRNA upstream 281443 8804651 ~ 8825324 (-) False LOC110520835
TU253206 other downstream 92375 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 152895 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 929712 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 944548 7556387 ~ 7558636 (-) False LOC110508494
TU252088 other downstream 972867 7528026 ~ 7530317 (-) True LOC110508472
TU253420 other upstream 239911 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 281489 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 294613 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 295476 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 330609 8853817 ~ 8949187 (-) False G222023

Expression Profile