RNA id: TU252581


Basic Information

Item Value
RNA id TU252581
length 1188
lncRNA type intronic
GC content 0.38
exon number 2
gene id G221312
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8515450 ~ 8518668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactcagcaaactggatgcagtttatcacagtgccatccgttttgttactaaagcaccgtataccacccaccactgcgacctgtatgctctagtcggctggccctcgctacatgttcgtcgccagacccactggctccaggtcatctacaagtccatgctaggtaaagctccgccttatctcagttcactggtcacgatggcaacacccacccgtagcacgcgctccagcaggtgtatctcactgatcatccctaaagccaacacctcatttggccgcctttccttccagttctctgctgcctgtgactggaacgaattgcaaaaatcgctgacgttggagacttatctccctcaccaactttaaacatctgctatctgagcagctaaccgatgcagctgtacatagtctatcggtaaatagcccacttaattttacctacctcatccccatactgtttttatttatttacttttctgctcttttgcacaccaatatctctacctgcacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctacctcctcatgccttttgcacacaatgtatatagactctcttttttttctactgtgttattgacttgtttattgtttactccatgtgtaactctgtgttgttgtctgttcacactgctatgctttatcttggccaggttgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaataaataaaaaaatacagaaacacactcaaccaccccgaggtacacacacacagtacacatacagaaacacactcaaccaccccgaggtacacacacacagtacacatacagaaacactcaaccaccccgaggtacacacacacagtacacatacagaaacacactcaaccaccccgaggtacacacacacagtacacatacagaaacacactcaaccaccccgaggtacacacacacagtacacatacagaaacacactcaaccaccccgaggtacacacacacagtacacatacagaaacacactcaaccaccccgaggtacacacacacacacagtacacatacagaaatacactcaaccaccccgaggtacacacacacagtacacatacagaaatacactcaaccaccctgaggtacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252700 lncRNA upstream 3071 8511779 ~ 8512379 (+) True G221406
TU252687 lncRNA upstream 35341 8479302 ~ 8480109 (+) False G221394
TU252688 lncRNA upstream 35341 8479666 ~ 8480109 (+) True G221394
TU252648 lncRNA upstream 97646 8417120 ~ 8417804 (+) True LOC110520859
TU252574 lncRNA upstream 186846 8327201 ~ 8328604 (+) True LOC118945294
TU252737 lncRNA downstream 49009 8567677 ~ 8569484 (+) True G221439
TU252741 lncRNA downstream 55262 8573930 ~ 8574246 (+) False G221441
TU252742 lncRNA downstream 55262 8573930 ~ 8669515 (+) True G221441
TU252761 lncRNA downstream 92534 8611202 ~ 8642621 (+) True G221458
TU252710 lncRNA downstream 109996 8628664 ~ 8630089 (+) False G221415
XR_005040417.1 mRNA upstream 57958 8436285 ~ 8457492 (+) False LOC110520873
XM_036967821.1 mRNA downstream 14273 8532941 ~ 8628472 (+) True LOC110520896
XM_021598313.2 mRNA downstream 112738 8631406 ~ 8637366 (+) True LOC110520869
XM_036967830.1 mRNA downstream 120376 8639044 ~ 8657683 (+) True LOC110520861
XM_036967855.1 mRNA downstream 161845 8680513 ~ 8684783 (+) True LOC110520797
XM_021598276.2 mRNA downstream 167869 8686537 ~ 8699160 (+) False LOC110520846
TU252560 other upstream 26383 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 26383 8399071 ~ 8489067 (+) False G221299
TU252563 other upstream 103920 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 343227 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1067573 7446369 ~ 7447877 (+) True LOC118945274
TU252829 other downstream 210309 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 210309 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 242666 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 255379 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 321556 8840224 ~ 8908728 (+) False G221526

Expression Profile