RNA id: TU253318


Basic Information

Item Value
RNA id TU253318
length 2402
lncRNA type intronic
GC content 0.49
exon number 3
gene id G221896
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8567672 ~ 8570629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatatgaacatactgttagaatgtacccagtgtttccctaacaaggtctgatatgaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgaatgtacccagtgtttccctaacaaggtctgatattaacatactgttagaatgtacccagtgtttctctaacaaggtctgatattaacatactgttagaatgtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253274 lncRNA downstream 89846 8477456 ~ 8477826 (-) True G221863
TU253266 lncRNA downstream 103126 8461540 ~ 8464546 (-) True G221855
TU253262 lncRNA downstream 110191 8454161 ~ 8457481 (-) True G221852
TU253244 lncRNA downstream 141555 8425678 ~ 8426117 (-) True G221835
TU253234 lncRNA downstream 153642 8413662 ~ 8414030 (-) True G221825
TU253346 lncRNA upstream 38508 8609137 ~ 8611384 (-) True G221922
TU253295 lncRNA upstream 58054 8628683 ~ 8630117 (-) False G221880
TU253296 lncRNA upstream 58054 8628683 ~ 8630117 (-) True G221880
TU253382 lncRNA upstream 110883 8681512 ~ 8682295 (-) True G221952
TU253391 lncRNA upstream 122745 8693374 ~ 8693897 (-) True G221960
XM_036967794.1 mRNA downstream 72282 8466936 ~ 8495390 (-) True LOC110520844
XM_036967789.1 mRNA downstream 72681 8466936 ~ 8494991 (-) False LOC110520844
XM_036967678.1 mRNA downstream 323929 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 727197 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967618.1 mRNA downstream 727198 7744358 ~ 7840474 (-) False si:dkey-246i14.3
XM_036967868.1 mRNA upstream 128406 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 128406 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 130834 8701463 ~ 8701598 (-) True LOC118964373
XR_005051421.1 mRNA upstream 131254 8701883 ~ 8702017 (-) True LOC118964372
XM_036967924.1 mRNA upstream 234022 8804651 ~ 8825324 (-) False LOC110520835
TU253214 other downstream 44464 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 156863 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 217383 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 994200 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 1009036 7556387 ~ 7558636 (-) False LOC110508494
TU253420 other upstream 192490 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 234068 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 247192 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 248055 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 283188 8853817 ~ 8949187 (-) False G222023

Expression Profile