RNA id: TU252742


Basic Information

Item Value
RNA id TU252742
length 241
lncRNA type read_through
GC content 0.60
exon number 5
gene id G221441
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8573930 ~ 8669515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctttttttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacacctttttttaaccaggtaggctagttgagaacacctttatttaaccaggtaggctagttgagaacaagttctcatttacaactgcgacctggccaagataaagcaaagcagttcgacacattcaagttacacatggagtaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252737 lncRNA upstream 4446 8567677 ~ 8569484 (+) True G221439
TU252572 lncRNA upstream 35509 8501737 ~ 8538421 (+) True G221303
TU252581 lncRNA upstream 55262 8515450 ~ 8518668 (+) True G221312
TU252700 lncRNA upstream 61551 8511779 ~ 8512379 (+) True G221406
TU252688 lncRNA upstream 93821 8479666 ~ 8480109 (+) True G221394
TU252814 lncRNA downstream 8981 8678496 ~ 8678798 (+) True G221499
TU252777 lncRNA downstream 29516 8699031 ~ 8699590 (+) False LOC110520846
TU252779 lncRNA downstream 29516 8699031 ~ 8703190 (+) True LOC110520846
TU252786 lncRNA downstream 94459 8763974 ~ 8766590 (+) True LOC110520796
TU252784 lncRNA downstream 130995 8800510 ~ 8801779 (+) True G221469
XM_036967801.1 mRNA upstream 50713 8499728 ~ 8523217 (+) False adar
XM_036967855.1 mRNA downstream 10998 8680513 ~ 8684783 (+) True LOC110520797
XM_021598276.2 mRNA downstream 17022 8686537 ~ 8699160 (+) False LOC110520846
XM_036967848.1 mRNA downstream 34195 8703710 ~ 8714435 (+) True LOC110520870
XM_036967901.1 mRNA downstream 46481 8715996 ~ 8764972 (+) False LOC110520796
XM_021598291.2 mRNA downstream 98262 8767777 ~ 8771883 (+) False LOC110520852
TU252560 other upstream 84863 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 84863 8399071 ~ 8489067 (+) False G221299
TU252563 other upstream 162400 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 401707 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1126053 7446369 ~ 7447877 (+) True LOC118945274
TU252829 other downstream 59462 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 59462 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 91819 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 104532 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 170709 8840224 ~ 8908728 (+) False G221526

Expression Profile