RNA id: TU252711


Basic Information

Item Value
RNA id TU252711
length 1367
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G221415
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8628664 ~ 8630089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggaggaagggggaaacAGATAACCTGGACTAATTACAGAGGTCTTTAATGGAATCCAATCTAATGACAGGAAAACGTCTTCCTCTCTTTTTCCATttgtccctctctatccctctttctcttcatctctttctctccctccatctctcgccctcttccctcccatccctccatcaggaatgattgactatgactttttgtCCTTATGATCTATTTTCTATCTAACTGCTACTTGTGTGGTAACGAGCATCCCTTTAACTAACCATTTAATCAACGACCATAATACATactaaacaccacacacacacacacacacacacactctccATGTAGTATGCCTACCttttaacacacacatacacacacaccatggcaaCATAAACACACTACAACAAAAtacacagcaaacacacacacacaaacacataaaatAGCACACAATATCGCGCCGCATTCTATAGTAGACTATAAAACACTATAGAATAGCCTATTACTGCTAAGCAGACAATGCACTAAGTCCAACTGAAAAGAACATACTGCCAGGCATTTATTACTTGACACAGAGCATAGACACGGTCCAAGGAAACACTACTGCCATATTTCCTTATGCACACATGTCCCCAAAACTCTGTTTTAATGAATGTAtgctgtacatttcaaaccaCAAGCACACCGTTTGCACAGGGGCACAGATATGCCtaaacccacacacatacacgctgAACCACACCcacatgtggacacacacacataatctacCAAAGTGCTCTCTCTCAAATGGACTACAAAAGAGAGGCAGAAGAGGATGTCACTggggagatgggaagaggagtTTCAGATTTCCCGACAATGTTTTTCAAGGAACATTGGATTTGGACTAGTACTAGTGCTTTGTGGACGGCACTTTTCACTGTGCTCGATGGACTGCCATAGACAGGGAATGAAGGAATATTAACCAGACAAAGGATACAGGCCATGGCAAGAGAGAAACGGTTGCTTACAAAACTTAACCCTATAGAGGGAGAGACTATATATCTGAGAGAATAATTATTATGATGTGATGGAATAAGATTTCTATTTCTACGGAGACCCTTTTGAAAACTGTCTTATAGTGACATTCTGTGGCCGGAATACTGAATTACACCCGCTTGGAATATTGTACTGTACAGTAAGTATACTGTTACTGAAATCTACATAGCTTTGTATTGCGCAGTCTTTTCTACCATTACGATTTAACGGTTATAGCTAATAtctactattattatactatagtattctTCTCATTCGTCCTGACAATTAATGAtaaatgtattaataataaactttaataataataaataatggaCAAGGGAGGTGCGTTTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252741 lncRNA upstream 54418 8573930 ~ 8574246 (+) False G221441
TU252737 lncRNA upstream 59180 8567677 ~ 8569484 (+) True G221439
TU252572 lncRNA upstream 90243 8501737 ~ 8538421 (+) True G221303
TU252814 lncRNA downstream 48407 8678496 ~ 8678798 (+) True G221499
TU252777 lncRNA downstream 68942 8699031 ~ 8699590 (+) False LOC110520846
TU252779 lncRNA downstream 68942 8699031 ~ 8703190 (+) True LOC110520846
TU252786 lncRNA downstream 133885 8763974 ~ 8766590 (+) True LOC110520796
TU252784 lncRNA downstream 170421 8800510 ~ 8801779 (+) True G221469
XM_036967821.1 mRNA upstream 192 8532941 ~ 8628472 (+) True LOC110520896
XM_036967810.1 mRNA upstream 105447 8499728 ~ 8523217 (+) False adar
XM_021598313.2 mRNA downstream 1317 8631406 ~ 8637366 (+) True LOC110520869
XM_036967830.1 mRNA downstream 8955 8639044 ~ 8657683 (+) True LOC110520861
XM_036967855.1 mRNA downstream 50424 8680513 ~ 8684783 (+) True LOC110520797
XM_021598276.2 mRNA downstream 56448 8686537 ~ 8699160 (+) False LOC110520846
XM_036967848.1 mRNA downstream 73621 8703710 ~ 8714435 (+) True LOC110520870
TU252560 other upstream 139597 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 139597 8399071 ~ 8489067 (+) False G221299
TU252563 other upstream 217134 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 456441 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1180787 7446369 ~ 7447877 (+) True LOC118945274
TU252829 other downstream 98888 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 98888 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 131245 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 143958 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 210135 8840224 ~ 8908728 (+) False G221526

Expression Profile