RNA id: TU252814


Basic Information

Item Value
RNA id TU252814
length 303
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G221499
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8678496 ~ 8678798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgctgtgatgttgacgctatggtcagggtctggtgtggactgttctgctgtggtgtcgagacttttgtcgggtgctgaggtgggctgttctgctggcttctctgtgggggtggccacatctctagtgggttgttctctgtcacacaccatccccctcaacctctcctccagcagtctgatcctctcctctagtgttctgttcttctcctgctcctgctcctgttgaagttgtctcaccactgtctagagtgcagatatgtctctctccacctccagctctccgggtctggttaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252742 lncRNA upstream 8981 8573930 ~ 8669515 (+) True G221441
TU252761 lncRNA upstream 35875 8611202 ~ 8642621 (+) True G221458
TU252710 lncRNA upstream 48407 8628664 ~ 8630089 (+) False G221415
TU252711 lncRNA upstream 48407 8628664 ~ 8630089 (+) True G221415
TU252741 lncRNA upstream 104250 8573930 ~ 8574246 (+) False G221441
TU252777 lncRNA downstream 20233 8699031 ~ 8699590 (+) False LOC110520846
TU252779 lncRNA downstream 20233 8699031 ~ 8703190 (+) True LOC110520846
TU252786 lncRNA downstream 85176 8763974 ~ 8766590 (+) True LOC110520796
TU252784 lncRNA downstream 121712 8800510 ~ 8801779 (+) True G221469
TU252873 lncRNA downstream 143332 8822130 ~ 8825071 (+) True G221545
XM_036967830.1 mRNA upstream 20813 8639044 ~ 8657683 (+) True LOC110520861
XM_021598313.2 mRNA upstream 41130 8631406 ~ 8637366 (+) True LOC110520869
XM_036967821.1 mRNA upstream 50024 8532941 ~ 8628472 (+) True LOC110520896
XM_036967810.1 mRNA upstream 155279 8499728 ~ 8523217 (+) False adar
XM_036967855.1 mRNA downstream 1715 8680513 ~ 8684783 (+) True LOC110520797
XM_021598276.2 mRNA downstream 7739 8686537 ~ 8699160 (+) False LOC110520846
XM_036967848.1 mRNA downstream 24912 8703710 ~ 8714435 (+) True LOC110520870
XM_036967901.1 mRNA downstream 37198 8715996 ~ 8764972 (+) False LOC110520796
XM_021598291.2 mRNA downstream 88979 8767777 ~ 8771883 (+) False LOC110520852
TU252560 other upstream 189429 8399071 ~ 8489067 (+) False G221299
TU252562 other upstream 189429 8399071 ~ 8489067 (+) False G221299
TU252563 other upstream 266966 8399071 ~ 8411530 (+) True G221299
TU252485 other upstream 506273 8170707 ~ 8172223 (+) False LOC110520790
TU251574 other upstream 1230619 7446369 ~ 7447877 (+) True LOC118945274
TU252829 other downstream 50179 8728977 ~ 8732478 (+) False G221514
TU252831 other downstream 50179 8728977 ~ 8731107 (+) True G221514
TU252791 other downstream 82536 8761334 ~ 8763589 (+) False LOC110520796
TU252792 other downstream 95249 8774047 ~ 8774950 (+) True LOC110520836
TU252852 other downstream 161426 8840224 ~ 8908728 (+) False G221526

Expression Profile