RNA id: TU253391


Basic Information

Item Value
RNA id TU253391
length 494
lncRNA type intronic
GC content 0.41
exon number 2
gene id G221960
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8693374 ~ 8693897 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaacccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggattgagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253382 lncRNA downstream 11079 8681512 ~ 8682295 (-) True G221952
TU253295 lncRNA downstream 63257 8628683 ~ 8630117 (-) False G221880
TU253296 lncRNA downstream 63257 8628683 ~ 8630117 (-) True G221880
TU253346 lncRNA downstream 81990 8609137 ~ 8611384 (-) True G221922
TU253318 lncRNA downstream 122745 8567672 ~ 8570629 (-) False G221896
TU253392 lncRNA upstream 94 8693991 ~ 8694374 (-) True G221961
TU253393 lncRNA upstream 670 8694567 ~ 8694802 (-) True G221962
TU253394 lncRNA upstream 947 8694844 ~ 8695076 (-) True G221963
TU253395 lncRNA upstream 1514 8695411 ~ 8695965 (-) True G221964
TU253397 lncRNA upstream 5134 8699031 ~ 8703202 (-) True LOC110520892
XM_036967794.1 mRNA downstream 197984 8466936 ~ 8495390 (-) True LOC110520844
XM_036967789.1 mRNA downstream 198383 8466936 ~ 8494991 (-) False LOC110520844
XM_036967678.1 mRNA downstream 449631 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 852899 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 852901 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967868.1 mRNA upstream 5138 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 5138 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 7566 8701463 ~ 8701598 (-) True LOC118964373
XR_005051421.1 mRNA upstream 7986 8701883 ~ 8702017 (-) True LOC118964372
XM_036967924.1 mRNA upstream 110754 8804651 ~ 8825324 (-) False LOC110520835
TU253214 other downstream 170166 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 282565 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 343085 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1119902 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 1134738 7556387 ~ 7558636 (-) False LOC110508494
TU253420 other upstream 69222 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 110800 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 123924 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 124787 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 159920 8853817 ~ 8949187 (-) False G222023

Expression Profile