RNA id: TU253395



Basic Information


Item Value
RNA id TU253395
length 255
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G221964
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8695411 ~ 8695965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacaaggtggtgtggttagttacctatgaacAAGAGAGTGGTTAGATAGTTACCTATGTATAAGGTGGCAGTAGTGGCCATAACTGCAAACACAGCAAAGACCAGGATGAGATGGAAGTCCAGGAGCTGAGTCCAGGAAGATTGTAGACGAATCAGATCTGTGGAACCTGAACACACACTCAGACAGGGTCAGATGTGTGGATACAGGGGTGAGTCAGTGGGCTATAGCAGGGTTTCCCTAACTctgtcctgccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253394 lncRNA downstream 335 8694844 ~ 8695076 (-) True G221963
TU253393 lncRNA downstream 609 8694567 ~ 8694802 (-) True G221962
TU253392 lncRNA downstream 1037 8693991 ~ 8694374 (-) True G221961
TU253391 lncRNA downstream 1514 8693374 ~ 8693897 (-) True G221960
TU253382 lncRNA downstream 13116 8681512 ~ 8682295 (-) True G221952
TU253397 lncRNA upstream 3066 8699031 ~ 8703202 (-) True LOC110520892
TU253399 lncRNA upstream 9036 8705001 ~ 8705540 (-) True G221967
TU253407 lncRNA upstream 22875 8718840 ~ 8722818 (-) True G221975
TU253421 lncRNA upstream 68021 8763986 ~ 8767476 (-) True G221987
TU253422 lncRNA upstream 74599 8770564 ~ 8771933 (-) False G221988
XM_036967794.1 mRNA downstream 200021 8466936 ~ 8495390 (-) True LOC110520844
XM_036967789.1 mRNA downstream 200420 8466936 ~ 8494991 (-) False LOC110520844
XM_036967678.1 mRNA downstream 451668 8214592 ~ 8243743 (-) False LOC110520794
XM_036967607.1 mRNA downstream 854936 7746237 ~ 7840475 (-) False si:dkey-246i14.3
XM_036967597.1 mRNA downstream 854938 7746237 ~ 7840473 (-) False si:dkey-246i14.3
XM_036967868.1 mRNA upstream 3070 8699035 ~ 8702619 (-) False LOC110520892
XM_021598339.2 mRNA upstream 3070 8699035 ~ 8703263 (-) False LOC110520892
XR_005051422.1 mRNA upstream 5498 8701463 ~ 8701598 (-) True LOC118964373
XR_005051421.1 mRNA upstream 5918 8701883 ~ 8702017 (-) True LOC118964372
XM_036967924.1 mRNA upstream 108686 8804651 ~ 8825324 (-) False LOC110520835
TU253214 other downstream 172203 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 284602 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 345122 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1121939 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 1136775 7556387 ~ 7558636 (-) False LOC110508494
TU253420 other upstream 67154 8763119 ~ 8763884 (-) True G221986
TU253443 other upstream 108732 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 121856 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 122719 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 157852 8853817 ~ 8949187 (-) False G222023

Expression Profile