RNA id: TU253420


Basic Information

Item Value
RNA id TU253420
length 574
RNA type TUCP
GC content 0.42
exon number 2
gene id G221986
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8763119 ~ 8763884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTGAAAGTATTGGAACAAGGCTGTAGCAAAGGTCCAGTCGTTCCCTCCTCATAATGCTGACTCCCTCCACCGCCCATCAGGATATGTCAGTAGCCTGTTCCttcatccttcctctcccctgtctaactCATCCTaccatcctccacctctcctcctccctttgtATCTCTTCTTCATTAGACCATACCATGCCTCCACTCTCCTCTGTGTGGGTACActttctgcctcctctccttttcctccccctcccctcccatctttcctccctcctccccctcttacAGGGCTGACTCTGTGTACAGTGTCCCTGATGACCCGTGAGGGGGGTTGGCCGTCAGTAATCGCCATAGCGACGCAGAGGAGGAGGAGCTTAAGTCGCCGCAGCTGCGCAAGTGGATCCCCTCCGTCACAGGGGGTTGGTTGCTATGACGGCGGTTGTGGCGGCTGTCGCTATGGGAGTGGTGGTGACCACGGTGATGAGGGTATGGCGGGTGGGTTCCCTGAATGCTCTGCGGCGGACGCCAGGTTCCGTTTGGAGCGCTGCAGGAAGCGAGCCACCAACCCCCTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253407 lncRNA downstream 40301 8718840 ~ 8722818 (-) True G221975
TU253399 lncRNA downstream 57579 8705001 ~ 8705540 (-) True G221967
TU253397 lncRNA downstream 59917 8699031 ~ 8703202 (-) True LOC110520892
TU253395 lncRNA downstream 67154 8695411 ~ 8695965 (-) True G221964
TU253394 lncRNA downstream 68043 8694844 ~ 8695076 (-) True G221963
TU253421 lncRNA upstream 102 8763986 ~ 8767476 (-) True G221987
TU253422 lncRNA upstream 6680 8770564 ~ 8771933 (-) False G221988
TU253423 lncRNA upstream 6680 8770564 ~ 8771933 (-) False G221988
TU253425 lncRNA upstream 6680 8770564 ~ 8771933 (-) False G221988
TU253426 lncRNA upstream 6680 8770564 ~ 8771933 (-) False G221988
XM_021598339.2 mRNA downstream 59856 8699035 ~ 8703263 (-) False LOC110520892
XM_036967868.1 mRNA downstream 60500 8699035 ~ 8702619 (-) False LOC110520892
XR_005051421.1 mRNA downstream 61102 8701883 ~ 8702017 (-) True LOC118964372
XR_005051422.1 mRNA downstream 61521 8701463 ~ 8701598 (-) True LOC118964373
XM_036967794.1 mRNA downstream 267729 8466936 ~ 8495390 (-) True LOC110520844
XM_036967924.1 mRNA upstream 40767 8804651 ~ 8825324 (-) False LOC110520835
XM_036967917.1 mRNA upstream 40767 8804651 ~ 8839675 (-) False LOC110520835
XM_036967919.1 mRNA upstream 40767 8804651 ~ 8839675 (-) False LOC110520835
XM_036967926.1 mRNA upstream 40767 8804651 ~ 8839676 (-) False LOC110520835
XR_005040454.1 mRNA upstream 42898 8806782 ~ 8839676 (-) False LOC110520835
TU253214 other downstream 239911 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 352310 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 412830 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1189647 7558939 ~ 7573472 (-) True LOC110508494
TU252033 other downstream 1204483 7556387 ~ 7558636 (-) False LOC110508494
TU253443 other upstream 40813 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 53937 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 54800 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 89933 8853817 ~ 8949187 (-) False G222023
TU253488 other upstream 89933 8853817 ~ 8921034 (-) False G222023

Expression Profile