RNA id: TU253421


Basic Information

Item Value
RNA id TU253421
length 1858
lncRNA type antisense_over
GC content 0.39
exon number 5
gene id G221987
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8763986 ~ 8767476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACATTAAATCTGTGGTTCCATAAGAATAGAATAAAATGGAATAGCGCATTTCTATAAAATGTTTAACCTAGCTACACATTTTgaacacattacacacattaaCACTTTCATGTTGTGGATCATTTATTCAATATGTTGAAATACATGACTTGCATTAAAAGTTCTTGCATTAGAACATTTATGTATCATATTTGAAGAGAATAATATGTTTATTCAGTTAGGCTCTATCACTTCAAGCCATACAATTATACAATGTGCAAGATAGGAGGTAGAAATTATAGCAACAGTTTTAACACAGCTCAGTGCttctgtgtgtttgagtgtgtgtgtgtgtgtgtgtttgagtgtgtgtgtgtgtgtgtgtggttgtgtgtctgtgtgtgggtgtaccTGTGTGTTGTGTTTAAATCAGTTACATACATAATTGTGTGTATATTCGCCATTGAGTGTATAACTCTTGTCCGACTGGGTTGAGGTTAGCCAACTTTCTATTCCAATCCAGACAGTATGTCCTCTAAGAATACTGCATGCTTTATGTTGTCCAACCTCCAGTATCAGACTATAATATCCAGATTCTCATAGTTCCCACTAAGTCTTGGTGGAACTACCATCCTGAATATCTGATCTCCAACATCTATACAAACGTATCTGTACATTTATTGCAAGAATCTCTTTAGTGCTTTGGGAATCCTACTGAGGTGTAATTGATCAGACATAATCGTTCAGCCAGAGCCAGACACATCACAGAGTTCATGGATGATAGTTAGTTAGAACCCAGTATATCTACGGCTCTGGGTTTAACAGCACAACATTGATCCATCCCCTTCACTAGACATTAACACATTTCCAAAGGCTCAGAGCAACTAGGTTTTgggtgcaagagagagagagagaaagggagaaaagtAAGAAGCATTGCCAAAACATGCAGCTAAAGTCATTCTTAGGGGAAGGTTGGTTATTTTGTAGGATTTGATCCACAGGGAGGGAAGTTGTAGTATTTCAACAAGGCTCCTGTTTCATTTGGAGTACATTATGGGGGGTTGTACCATAACATACAAATCAAATCGCTATGTCCAAGGTCATCTCAGAGACAGGAAATGCCGAGTTTAGGAGTATGATGTCTTAGACCGGTGTAATAAGAGtcagttttgagtttggggcagatggtgtgtgagttttgagtttggggtagatggtgtgtgagttttgagtttggggtagatggtgtgttagCTTTGAGTTTGAGGCACCTTTCTTCTGAAGGCAGATTGGAGATGGACTAGGTAAGGGCTGTTGATGATTACATCTTGATTTTACCTCAAGAAAATgaaccacaaaaaaaaaagactaaaATAATAACGATGTAAGTTTGTAAACATACGGCGAAACTAGCAGGCCATTAAACTTTCACTGTCAGTGGGCAAAACGAGTGTACATTTTTCTGTACATTTTACAGTGTCATCAGGAGAAAAGGAAGGTTAACCATTTCAGATGAAGACAAAAAGGTGAGTTCCGTGAACACTTAGTGAATTTCGCTCCGGATGAAGAGCTGGACAAATGAACGTACATTTGAGTTTTGAAAAAGAGTGAGCAGTTTAATGAGTGTATGCGGTTCGTGTAAGAGTGATGTTCACAGCTCCAGAAAAGTGTTTACCttagacacagatctaggatcagcttatgCTCCActgatcctaaccttaaccattacgaGGAGAAACACTAAACTGACCATAGCTCAGAGTCTAGGGGAAACTTCATTATCctactccttctctccatcctctctactCTTGAAGTTAGAGAGAGATCCTAGAGAGTTGGAGAGGACAGATAGAGTTGTTTTCAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253407 lncRNA downstream 41168 8718840 ~ 8722818 (-) True G221975
TU253399 lncRNA downstream 58446 8705001 ~ 8705540 (-) True G221967
TU253397 lncRNA downstream 60784 8699031 ~ 8703202 (-) True LOC110520892
TU253395 lncRNA downstream 68021 8695411 ~ 8695965 (-) True G221964
TU253394 lncRNA downstream 68910 8694844 ~ 8695076 (-) True G221963
TU253422 lncRNA upstream 3088 8770564 ~ 8771933 (-) False G221988
TU253423 lncRNA upstream 3088 8770564 ~ 8771933 (-) False G221988
TU253425 lncRNA upstream 3088 8770564 ~ 8771933 (-) False G221988
TU253426 lncRNA upstream 3088 8770564 ~ 8771933 (-) False G221988
TU253427 lncRNA upstream 3088 8770564 ~ 8771933 (-) False G221988
XM_021598339.2 mRNA downstream 60723 8699035 ~ 8703263 (-) False LOC110520892
XM_036967868.1 mRNA downstream 61367 8699035 ~ 8702619 (-) False LOC110520892
XR_005051421.1 mRNA downstream 61969 8701883 ~ 8702017 (-) True LOC118964372
XR_005051422.1 mRNA downstream 62388 8701463 ~ 8701598 (-) True LOC118964373
XM_036967794.1 mRNA downstream 268596 8466936 ~ 8495390 (-) True LOC110520844
XM_036967924.1 mRNA upstream 37175 8804651 ~ 8825324 (-) False LOC110520835
XM_036967917.1 mRNA upstream 37175 8804651 ~ 8839675 (-) False LOC110520835
XM_036967919.1 mRNA upstream 37175 8804651 ~ 8839675 (-) False LOC110520835
XM_036967926.1 mRNA upstream 37175 8804651 ~ 8839676 (-) False LOC110520835
XR_005040454.1 mRNA upstream 39306 8806782 ~ 8839676 (-) False LOC110520835
TU253420 other downstream 102 8763119 ~ 8763884 (-) True G221986
TU253214 other downstream 240778 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 353177 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 413697 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1190514 7558939 ~ 7573472 (-) True LOC110508494
TU253443 other upstream 37221 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 50345 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 51208 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 86341 8853817 ~ 8949187 (-) False G222023
TU253488 other upstream 86341 8853817 ~ 8921034 (-) False G222023

Expression Profile