RNA id: TU253423


Basic Information

Item Value
RNA id TU253423
length 1322
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G221988
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8770564 ~ 8771933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCGCTGTACTATATTGTTTTCcacaaaaggtctgaatactaaaCCCATGTTGGTCACATTTCTTTATTAAAAGCAATACGATGCCATATTGTCAGCAGCAGGTAGATGTACAGTAGTAATTAGAAAGAGATGATTATacacagagggagatagaggtaCAGTAGTAATTAGAAAGAGATGATTATacacagagggagatagaggtaCAGTAGTAATTAGAAAGAGATGATTATacacagagggagatagaggtaCAGTAGTAATTAGAAAGAGATGATTATACACAGAGTGAGATAGAGGTACAGTAGTAATTAGAAAGAGATGATTATacacagagggagatagagaaaacATAATACAAAGACAGAACATGGTGTGAGAGACAGCAGGATTGTTCCTTTCAGGCAGCTTCCTGCTCTAGTCCATTCACTCTGCCGGTAGAGACCAGAGCCCCCTGCCGGTAGAGACCAGAGCCCCCTGCCGGTAGAGACCAGAGCCCCCTGCCGGTAGAGACCAGAGCCCCAGGTTGTCATCCTGATTGATGTGATCATCAACCAATAATGATGTCATACCCTGCCGTCATCATCAAATCCACAGGATTCTAGagcagacagttcctaacagtgACATGATGTTATACTCACGTCATCATCAATGATGACATGGTATTCCCAGTTTGAGTAATCAGTTATTCTGTACATAATTGAAAATCATATtatggagaagaagaaaaaagggcACACAGGGGTCCTTGAAGACCAGGTTTAAGACTGACTGGCCTCAACCAGGTTCACTCGCAGTCCAAACTAAAGCCTTGTTCTATTTAGGTCCCTAGACCCTTAACCTAACCCAGGGCTCcccaaacctgttcctggagagctaccctcctgtaggtttccacTCTTATTACAATCAGGTGCattagattagggttggagcgaaaacctacaggatggtagctctccaggaccagggttggagagccctgccctaGCCCTTAACCCCATGGTGTTCACTGAAGGGGTAGGAGCAAGGGACCGAAATGGAAGCAGCCACACCAACTAGCCCTCCTCAGTCCAGCTACAGTGCAACACACACTAAATAAAAACAGTCTCATCATAGTGTTCACTTGTTTCTCTTGTAGATTTTCTTGGCAAAGTTGAGGAAAACTGCGTGTGGAAGGTTTTGGGCGTGGCGCGCGATGAGTTTCTGTAAGCGCTGATAGCTGTCGTCTTCGTATTGGTGGTACAGGGTGGGCATCTGTAGGGTGTTGTACAGTGCTTTCACCTTCTCCACACTGTCATGCCGACCATAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253421 lncRNA downstream 3088 8763986 ~ 8767476 (-) True G221987
TU253407 lncRNA downstream 47746 8718840 ~ 8722818 (-) True G221975
TU253399 lncRNA downstream 65024 8705001 ~ 8705540 (-) True G221967
TU253397 lncRNA downstream 67362 8699031 ~ 8703202 (-) True LOC110520892
TU253395 lncRNA downstream 74599 8695411 ~ 8695965 (-) True G221964
TU253465 lncRNA upstream 30018 8801951 ~ 8803019 (-) True G222007
TU253467 lncRNA upstream 31172 8803105 ~ 8803666 (-) True G222009
TU253498 lncRNA upstream 81027 8852960 ~ 8912310 (-) True G222025
TU253533 lncRNA upstream 181491 8953424 ~ 8953678 (-) True G222059
TU253538 lncRNA upstream 191819 8963752 ~ 8963983 (-) True G222064
XM_021598339.2 mRNA downstream 67301 8699035 ~ 8703263 (-) False LOC110520892
XM_036967868.1 mRNA downstream 67945 8699035 ~ 8702619 (-) False LOC110520892
XR_005051421.1 mRNA downstream 68547 8701883 ~ 8702017 (-) True LOC118964372
XR_005051422.1 mRNA downstream 68966 8701463 ~ 8701598 (-) True LOC118964373
XM_036967794.1 mRNA downstream 275174 8466936 ~ 8495390 (-) True LOC110520844
XM_036967924.1 mRNA upstream 32718 8804651 ~ 8825324 (-) False LOC110520835
XM_036967917.1 mRNA upstream 32718 8804651 ~ 8839675 (-) False LOC110520835
XM_036967919.1 mRNA upstream 32718 8804651 ~ 8839675 (-) False LOC110520835
XM_036967926.1 mRNA upstream 32718 8804651 ~ 8839676 (-) False LOC110520835
XR_005040454.1 mRNA upstream 34849 8806782 ~ 8839676 (-) False LOC110520835
TU253420 other downstream 6680 8763119 ~ 8763884 (-) True G221986
TU253214 other downstream 247356 8503184 ~ 8523208 (-) True G221807
TU253206 other downstream 359755 8394361 ~ 8410809 (-) False G221806
TU253177 other downstream 420275 8349319 ~ 8350289 (-) True G221788
TU252035 other downstream 1197092 7558939 ~ 7573472 (-) True LOC110508494
TU253443 other upstream 32764 8804697 ~ 8817709 (-) False LOC110520835
TU253445 other upstream 45888 8817821 ~ 8818214 (-) False LOC110520835
TU253444 other upstream 46751 8818684 ~ 8821067 (-) True LOC110520835
TU253485 other upstream 81884 8853817 ~ 8949187 (-) False G222023
TU253488 other upstream 81884 8853817 ~ 8921034 (-) False G222023