RNA id: TU252784


Basic Information

Item Value
RNA id TU252784
length 1270
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G221469
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8800510 ~ 8801779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattaatttgcattttattgcacgacataagtatttgatacatcagaaaagcagaatttaatatttggtacagaaacctttgtttgcaattacagagatcatacgtttcctgtagttcttgaccaggtttgcacacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtctcttggcaatatggacttttagctccatccaaagattttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttacggggccactccttagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacttagccacgacccatcttcaatgctcttactgagggaaggaagttgttggccaagatctcacgatagttggccaagatctcgcgatacatggccccatccatcctcacctcaatacggtgcagtcgtcctgtcccctttgcagaaaagtatccccaaagaatgatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatcctttttcttcctccaaacacggcgagtggagtttagaccaaaaaactctatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatccagatggtcattggcaaacttcacacgggcctggacatgcgctggcttgagcagggggaccttgcgagcgctgcaggattttaatccatgacggagtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaagtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaatttcatccctgatgtccttacacagctctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtcttttatacaggtcacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacaggtctgtgagagccggaattcttactggttggtaggtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252786 lncRNA upstream 33920 8763974 ~ 8766590 (+) True LOC110520796
TU252779 lncRNA upstream 97320 8699031 ~ 8703190 (+) True LOC110520846
TU252777 lncRNA upstream 100920 8699031 ~ 8699590 (+) False LOC110520846
TU252814 lncRNA upstream 121712 8678496 ~ 8678798 (+) True G221499
TU252710 lncRNA upstream 170421 8628664 ~ 8630089 (+) False G221415
TU252873 lncRNA downstream 20351 8822130 ~ 8825071 (+) True G221545
TU252872 lncRNA downstream 21345 8823124 ~ 8823805 (+) True G221544
TU252874 lncRNA downstream 24271 8826050 ~ 8826757 (+) True G221546
TU252853 lncRNA downstream 38445 8840224 ~ 8847721 (+) False G221526
TU252892 lncRNA downstream 60559 8862338 ~ 8863661 (+) True G221561
XM_036967881.1 mRNA upstream 46 8772336 ~ 8800464 (+) False LOC110520836
XM_036967883.1 mRNA upstream 46 8772336 ~ 8800464 (+) False LOC110520836
XM_036967889.1 mRNA upstream 46 8772336 ~ 8800464 (+) False LOC110520836
XM_036967898.1 mRNA upstream 46 8772337 ~ 8800464 (+) False LOC110520836
XM_021598291.2 mRNA upstream 28627 8767777 ~ 8771883 (+) False LOC110520852
XM_036967950.1 mRNA downstream 38411 8840190 ~ 8853689 (+) False LOC110520850
XM_036967946.1 mRNA downstream 38429 8840208 ~ 8853689 (+) False LOC110520850
XM_036967955.1 mRNA downstream 44537 8846316 ~ 8853689 (+) True LOC110520850
LOC110516768 mRNA downstream 63985 8865764 ~ 8878653 (+) False LOC110516768
XR_005040472.1 mRNA downstream 96242 8898021 ~ 8926057 (+) True LOC118945318
TU252792 other upstream 25560 8774047 ~ 8774950 (+) True LOC110520836
TU252791 other upstream 36921 8761334 ~ 8763589 (+) False LOC110520796
TU252829 other upstream 68032 8728977 ~ 8732478 (+) False G221514
TU252831 other upstream 69403 8728977 ~ 8731107 (+) True G221514
TU252562 other upstream 311443 8399071 ~ 8489067 (+) False G221299
TU252852 other downstream 38445 8840224 ~ 8908728 (+) False G221526
TU252844 other downstream 46057 8847836 ~ 8851563 (+) False G221525
TU252867 other downstream 59721 8861500 ~ 8863976 (+) True G221539
TU252851 other downstream 104839 8906618 ~ 8908728 (+) True G221526
TU253570 other downstream 233579 9035358 ~ 9035833 (+) True G222089

Expression Profile