RNA id: TU252874



Basic Information


Item Value
RNA id TU252874
length 249
lncRNA type intronic
GC content 0.47
exon number 2
gene id G221546
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8826050 ~ 8826757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAAAACGTATTTTTGGAAACGAGTGTGaattcctccccctcccctggtTTCCTCTAAGTCAAGTAAGCTTTTCATTGACCCCATTGTAAATTGACTTTTAATGTGATGCTATGGCAAGTAACACACCCAACAATAACGTTCCCCTGAACAGCCATAGtttactctctgtctccctctctctgtctccctctctctgtctccctctgtctccctctctctgtctccctctctctgtctccctctctctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU252873 lncRNA upstream 979 8822130 ~ 8825071 (+) True G221545
TU252872 lncRNA upstream 2245 8823124 ~ 8823805 (+) True G221544
TU252784 lncRNA upstream 24271 8800510 ~ 8801779 (+) True G221469
TU252786 lncRNA upstream 59460 8763974 ~ 8766590 (+) True LOC110520796
TU252779 lncRNA upstream 122860 8699031 ~ 8703190 (+) True LOC110520846
TU252853 lncRNA downstream 13467 8840224 ~ 8847721 (+) False G221526
TU252892 lncRNA downstream 35581 8862338 ~ 8863661 (+) True G221561
TU252858 lncRNA downstream 46379 8873136 ~ 8874052 (+) True LOC110516768
TU252845 lncRNA downstream 51077 8877834 ~ 8878616 (+) True G221525
TU252900 lncRNA downstream 59570 8886327 ~ 8919260 (+) True G221567
XM_036967881.1 mRNA upstream 25586 8772336 ~ 8800464 (+) False LOC110520836
XM_036967883.1 mRNA upstream 25586 8772336 ~ 8800464 (+) False LOC110520836
XM_036967889.1 mRNA upstream 25586 8772336 ~ 8800464 (+) False LOC110520836
XM_036967898.1 mRNA upstream 25586 8772337 ~ 8800464 (+) False LOC110520836
XR_005040446.1 mRNA upstream 54167 8767777 ~ 8771883 (+) True LOC110520852
XM_036967950.1 mRNA downstream 13433 8840190 ~ 8853689 (+) False LOC110520850
XM_036967946.1 mRNA downstream 13451 8840208 ~ 8853689 (+) False LOC110520850
XM_036967955.1 mRNA downstream 19559 8846316 ~ 8853689 (+) True LOC110520850
LOC110516768 mRNA downstream 39007 8865764 ~ 8878653 (+) False LOC110516768
XR_005040472.1 mRNA downstream 71264 8898021 ~ 8926057 (+) True LOC118945318
TU252792 other upstream 51100 8774047 ~ 8774950 (+) True LOC110520836
TU252791 other upstream 62461 8761334 ~ 8763589 (+) False LOC110520796
TU252829 other upstream 93572 8728977 ~ 8732478 (+) False G221514
TU252831 other upstream 94943 8728977 ~ 8731107 (+) True G221514
TU252563 other upstream 414520 8399071 ~ 8411530 (+) True G221299
TU252852 other downstream 13467 8840224 ~ 8908728 (+) False G221526
TU252844 other downstream 21079 8847836 ~ 8851563 (+) False G221525
TU252867 other downstream 34743 8861500 ~ 8863976 (+) True G221539
TU252851 other downstream 79861 8906618 ~ 8908728 (+) True G221526
TU253570 other downstream 208601 9035358 ~ 9035833 (+) True G222089

Expression Profile