RNA id: TU253490



Basic Information


Item Value
RNA id TU253490
length 763
RNA type TUCP
GC content 0.50
exon number 4
gene id G222023
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 8853817 ~ 8949187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATCCTCATTTGCAATTCCCAGCACTATTTTGTCACGAATCAATTCATCTTTCAATCCCCAGGATTCACAAGTAGCGGATCTTTCTCTCAAACGTGTTACAAAGATGTGTACTGACACACTGTTTGCAGCTTCCGAAAACGAACCAATCGTAAATGACGTTCCTGGGATATAAGGCCAGAGCTGCTTCATCACCGCACAACTGCCTCTTCAATCTACTGCTCCTAAATACTTGGAAGTTCATTTAAGAATTTGAGAATCATGAGTATGAACTACATGAGCACTGAGAGGATTCTGCTGAAAGAGGACTACCTCCTCTCCAACAATGGACAATTTAAAGCTATCTTTCAGACCGATGGCAACTTTGTGCTCTACGGTTGGGGTCGGGTTGTCTGGGCATCAAACACTGTGAACAAAGATGCTCAGAGGCTCATCCTCCAAAAGGATGGCAACCTGGTCATCTACACCAAACAGGACCATCCCATTTGGTCAAGTAACACCGCCCGTTGCAACAATACACAAAGAGGCCACCTCACCCTCACTGACAAAGGTACCCTGGAGCTCTACAGAGACCGAGAGGTGATCTGGACATCGTAACATCGACCGGCCCAACAATGCACAGAGGTCACCTCACCCTCACTGACGAAGGTGCCCTGATGCTCTACAGTCCCAGAAATGTGGTCTGGTGCTCTCGTGAGGACACTAGTAATGAGGCAGAGTAACAGCTTCACTTGACCATACCTGTCTACATCTACCACTAAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU253467 lncRNA downstream 75405 8803105 ~ 8803666 (-) True G222009
TU253465 lncRNA downstream 76052 8801951 ~ 8803019 (-) True G222007
TU253432 lncRNA downstream 107138 8770564 ~ 8771933 (-) False G221988
TU253533 lncRNA upstream 64505 8953424 ~ 8953678 (-) True G222059
TU253538 lncRNA upstream 74833 8963752 ~ 8963983 (-) True G222064
TU253540 lncRNA upstream 82557 8971476 ~ 8972335 (-) True G222066
TU253992 lncRNA upstream 96725 8985644 ~ 8987837 (-) True G222412
TU254001 lncRNA upstream 99219 8988138 ~ 8989011 (-) True LOC110520814
XM_036967991.1 mRNA downstream 16840 8853815 ~ 8862231 (-) True LOC110516769
XM_036967999.1 mRNA downstream 17901 8853815 ~ 8861170 (-) False LOC110516769
XM_021598257.2 mRNA downstream 39392 8811903 ~ 8839679 (-) False LOC110520835
XR_005040454.1 mRNA downstream 39395 8806782 ~ 8839676 (-) False LOC110520835
XM_021598328.2 mRNA upstream 23520 8912439 ~ 8921056 (-) False LOC110520883
XM_021598329.2 mRNA upstream 23520 8912439 ~ 8921058 (-) True LOC110520883
XM_036963171.1 mRNA upstream 49901 8938820 ~ 8949179 (-) False LOC100136250
NM_001124514.1 mRNA upstream 49904 8938823 ~ 8949165 (-) True LOC100136250
XM_021598296.2 mRNA upstream 85037 8973956 ~ 8982261 (-) False LOC110520856
TU253444 other downstream 58004 8818684 ~ 8821067 (-) True LOC110520835
TU253445 other downstream 60857 8817821 ~ 8818214 (-) False LOC110520835
TU253443 other downstream 61362 8804697 ~ 8817709 (-) False LOC110520835
TU253420 other downstream 115187 8763119 ~ 8763884 (-) True G221986
TU253214 other downstream 355863 8503184 ~ 8523208 (-) True G221807
TU253489 other upstream 23516 8912435 ~ 8921589 (-) False G222023
TU253486 other upstream 49977 8938896 ~ 8949187 (-) True G222023
TU254073 other upstream 204261 9093180 ~ 9095136 (-) False G222465
TU254075 other upstream 204957 9093876 ~ 9095216 (-) True G222465
TU254025 other upstream 222054 9110973 ~ 9118373 (-) True LOC110501040

Expression Profile