RNA id: TU253570


Basic Information

Item Value
RNA id TU253570
length 296
RNA type TUCP
GC content 0.49
exon number 2
gene id G222089
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9035358 ~ 9035833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtcagcatggagcagccagggccgccagtcagcatggagcagccagagccgccagtcagcatggagcagccagagcagccagtcagcatggagcagccagagcagccagtctgcatggagcagccagagctgccagtcagcatggagcagccagtcagcatggagcagccagaactgccagtcagccagactcttccagatctgccagtcagccagactcttccagatctgccagtcaaccagactcttccagatctgccagtcaaccagactcttccagatctgccagtcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253545 lncRNA upstream 47583 8983672 ~ 8987775 (+) False LOC110520813
TU253546 lncRNA upstream 47583 8986869 ~ 8987775 (+) True LOC110520813
TU253550 lncRNA upstream 61633 8973096 ~ 8973725 (+) False G222069
TU253548 lncRNA upstream 61633 8973250 ~ 8973725 (+) False G222069
TU253549 lncRNA upstream 61731 8973250 ~ 8973627 (+) True G222069
TU253575 lncRNA downstream 16300 9052133 ~ 9054013 (+) True G222094
TU253584 lncRNA downstream 25774 9061607 ~ 9061840 (+) True G222099
TU253586 lncRNA downstream 28582 9064415 ~ 9064640 (+) True G222101
TU253599 lncRNA downstream 36301 9072134 ~ 9072541 (+) True G222108
TU253602 lncRNA downstream 51155 9086988 ~ 9087193 (+) True G222111
LOC110520813 mRNA upstream 47512 8982594 ~ 8987846 (+) False LOC110520813
XM_036967958.1 mRNA upstream 96660 8932771 ~ 8938698 (+) True LOC110517169
XR_005040472.1 mRNA upstream 109301 8898021 ~ 8926057 (+) True LOC118945318
LOC110520801 mRNA upstream 123048 8906566 ~ 8912310 (+) False LOC110520801
LOC110516768 mRNA upstream 156705 8865764 ~ 8878653 (+) False LOC110516768
XM_036968162.1 mRNA downstream 427504 9463337 ~ 9483086 (+) False LOC110520819
XM_036968160.1 mRNA downstream 427505 9463338 ~ 9483086 (+) True LOC110520819
XM_036963772.1 mRNA downstream 449767 9485600 ~ 9486125 (+) True LOC118944441
XM_036968166.1 mRNA downstream 454500 9490333 ~ 9508263 (+) False LOC110520820
XM_036968170.1 mRNA downstream 454501 9490334 ~ 9508263 (+) False LOC110520820
TU252852 other upstream 126630 8840224 ~ 8908728 (+) False G221526
TU252851 other upstream 126630 8906618 ~ 8908728 (+) True G221526
TU252867 other upstream 171382 8861500 ~ 8863976 (+) True G221539
TU252844 other upstream 183795 8847836 ~ 8851563 (+) False G221525
TU252792 other upstream 260408 8774047 ~ 8774950 (+) True LOC110520836
TU253587 other downstream 31313 9067146 ~ 9068151 (+) True G222102
TU253800 other downstream 409214 9445047 ~ 9445704 (+) True G222287
TU253820 other downstream 466771 9502604 ~ 9506786 (+) False LOC110520820
TU253887 other downstream 570472 9606305 ~ 9611139 (+) True G222345
TU253897 other downstream 643927 9679760 ~ 9681752 (+) True G222353

Expression Profile