RNA id: TU254073


Basic Information

Item Value
RNA id TU254073
length 1447
RNA type TUCP
GC content 0.46
exon number 2
gene id G222465
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9093180 ~ 9095216 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCCGTCTACAGTCCTGTAAGGAAAATAAAAGAATGAGACGTGTGAGCTGAGGGCTGAAGTTATTCTCCACCAATCTGGAACAGAGTTCCATTACAGAGACACACTGCAGCAGACATTACGGATCCATAACCAGCTTCAAGACTTCTAAAGGATGAAGAACCTTAaacttctcatcctctctctctccatctgcctgtTGCTGGGCAACCTGGGGGTGAGTGGCTACAGTAATGTCGAACCCTGCCAACGGTCCCGATGCAATAACTGCCATGAAAAGTTCCTATACCGGCATGTGCGTCCAAATACCCCGTTTTACGACGGACCGCAACGCGTGGGAGAAGTATCTACGTGGAAAAAAACGACTGCTCAAGACCCACGCAGTCCTTCCTCCATCCCAAAGACCGGGAGAGGGTGGACGCGGTCTGCTCCAGCTCTGGGGGAAAGAGGTACCAGGGGAACCTGTGCATCAGCCAAAGCCCTTTCACGTTTCTAACAGTGAGGAGTGAGACTGGGACCTGCGGTGTGTCCAGCGTGCGGGAGGAGACCAAGCATTTGATCCTGGCATGTGAGGTGCTGGAGAACAGGTGTGTGCCGGTCCACTTCGAGGGGAACCGCGAGGGGAGCAAGCCCGACAATAACGCTGCAGGATGTGGCAGCACGGAGAAAGGGAAGGGCTCGAGCTTCAAAGTATCAGGAATGTGGCTGGCATCTTCATTGATACTCATGTTTCTCTCACAACTCCTTTTCTGAACagttaatggggggggggggggggggcagatagtCAAACAATACATCAAAAGGAAGTTCGTtttaaagtgtctgtcctaaaaaaaaaaaattcccgGAGTttcctttaggggttcttcaaatttaagagtctcatctttccatagaggggtcgcATTAGTTTGttggccaaaccgttcggacgctacagacgtttttgtgagaagaacGATTTCCGCAATGTCTCGTGGTCTGACAAACAGTAGCTTGgtcaccttccaccacagatgtgGAAGGACGCCATTGGCGGATGAGGtgaattgagacgcagcccatccAAAAAGCTACATCTCTCTAGCTTAGAGCTACAAtttgtaactttttgggcaacccaaccaaattcacatagaaatatgagtTATAGATCTTATATAGATCAATAACTATATAGATCTCTATAGatcaagtctaagaagcggtagatctgttctatgtgtgctattttcGCGTCTTTTACTTTCAGATTTGTACACAagcaatatttttggttattgaaaaaatatttcacagcagtttaggtGGAActatgattctctacacaatgactgcCTGTTTTGTCATAAAATTTTAATAGTTTACCTCatttcagtttatcaaccaggaaatggcggagtgatTTCTTAATAGTACATCTTTAAACAGagggattttgatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254072 lncRNA downstream 58 9092358 ~ 9093122 (-) True G222464
TU254061 lncRNA downstream 19354 9073608 ~ 9073826 (-) True G222455
TU254036 lncRNA downstream 20562 9071936 ~ 9072618 (-) False G222435
TU254037 lncRNA downstream 20562 9072161 ~ 9072618 (-) True G222435
TU254034 lncRNA downstream 20628 9071936 ~ 9072552 (-) False G222435
TU254024 lncRNA upstream 2827 9097963 ~ 9098998 (-) True G222425
TU254077 lncRNA upstream 12374 9107510 ~ 9107836 (-) True G222467
TU254011 lncRNA upstream 23704 9118840 ~ 9121329 (-) False G222423
TU254012 lncRNA upstream 23704 9118840 ~ 9121329 (-) False G222423
TU254013 lncRNA upstream 23704 9118840 ~ 9121329 (-) False G222423
XM_036968013.1 mRNA downstream 42318 8988084 ~ 9050862 (-) False LOC110520814
XM_021598297.2 mRNA downstream 110897 8973956 ~ 8982283 (-) True LOC110520856
XM_021598296.2 mRNA downstream 110919 8973956 ~ 8982261 (-) False LOC110520856
XM_036963171.1 mRNA downstream 144001 8938820 ~ 8949179 (-) False LOC100136250
NM_001124514.1 mRNA downstream 144015 8938823 ~ 8949165 (-) True LOC100136250
XM_036968044.1 mRNA upstream 6289 9101425 ~ 9118436 (-) False LOC110501040
XM_036968051.1 mRNA upstream 6289 9101425 ~ 9118436 (-) False LOC110501040
XM_036968059.1 mRNA upstream 6289 9101425 ~ 9118436 (-) False LOC110501040
XM_036968026.1 mRNA upstream 6289 9101425 ~ 9118437 (-) False LOC110501040
XM_036968035.1 mRNA upstream 6289 9101425 ~ 9118437 (-) False LOC110501040
TU253485 other downstream 143993 8853817 ~ 8949187 (-) False G222023
TU253487 other downstream 143993 8879071 ~ 8949187 (-) False G222023
TU253486 other downstream 143993 8938896 ~ 8949187 (-) True G222023
TU253493 other downstream 171591 8853817 ~ 8921589 (-) False G222023
TU253489 other downstream 171591 8912435 ~ 8921589 (-) False G222023
TU254025 other upstream 15837 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 399660 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 436038 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 466609 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 522489 9617625 ~ 9622934 (-) False G222662

Expression Profile