RNA id: TU254077



Basic Information


Item Value
RNA id TU254077
length 327
lncRNA type intronic
GC content 0.49
exon number 1
gene id G222467
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9107510 ~ 9107836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttaattttgagcttggagggtactatggtgttgaatgctgagctgtagtcaatgaacagcattcttacataggtattcctattggggcagtgtgatggcttgaatcgtctgtggacctgttggggcggtatgcaaaccgaagtgggtctagggtggccggtaaggtggaggtgatatgatccttgactagtctctcaaagcacttcatgatgacagaagtgagtgctacggggcggtagtcagttagttcagttatctttgccttcttgggtacaggaacaatggtggccatcttgaagcggGGACATCAGACTgagatagggagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU254024 lncRNA downstream 8512 9097963 ~ 9098998 (-) True G222425
TU254072 lncRNA downstream 14388 9092358 ~ 9093122 (-) True G222464
TU254061 lncRNA downstream 33684 9073608 ~ 9073826 (-) True G222455
TU254036 lncRNA downstream 34892 9071936 ~ 9072618 (-) False G222435
TU254011 lncRNA upstream 11004 9118840 ~ 9121329 (-) False G222423
TU254012 lncRNA upstream 11004 9118840 ~ 9121329 (-) False G222423
TU254013 lncRNA upstream 11004 9118840 ~ 9121329 (-) False G222423
TU254014 lncRNA upstream 11004 9118840 ~ 9121329 (-) False G222423
TU254015 lncRNA upstream 11004 9118840 ~ 9121329 (-) False G222423
XM_036968013.1 mRNA downstream 56648 8988084 ~ 9050862 (-) False LOC110520814
XM_021598297.2 mRNA downstream 125227 8973956 ~ 8982283 (-) True LOC110520856
XM_021598296.2 mRNA downstream 125249 8973956 ~ 8982261 (-) False LOC110520856
XM_036963171.1 mRNA downstream 158331 8938820 ~ 8949179 (-) False LOC100136250
XM_036968074.1 mRNA upstream 14386 9122222 ~ 9149197 (-) False LOC110500119
XM_036968084.1 mRNA upstream 14461 9122297 ~ 9146453 (-) False LOC110500119
XM_036968088.1 mRNA upstream 14461 9122297 ~ 9146864 (-) False LOC110500119
XM_036968081.1 mRNA upstream 14461 9122297 ~ 9150991 (-) True LOC110500119
XM_036968109.1 mRNA upstream 53147 9160983 ~ 9222948 (-) False LOC110508553
TU254075 other downstream 12294 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 12374 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 158323 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 185921 8912435 ~ 8921589 (-) False G222023
TU253494 other downstream 219692 8879071 ~ 8887818 (-) False G222023
TU254025 other upstream 3137 9110973 ~ 9118373 (-) True LOC110501040
TU254242 other upstream 386960 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 423338 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 453909 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 509789 9617625 ~ 9622934 (-) False G222662

Expression Profile