RNA id: TU254017


Basic Information

Item Value
RNA id TU254017
length 2332
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G222423
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9118840 ~ 9121329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatttttttacattacattttccCCTAAAACTAGACATCTTAGTCCTAAGAATGATAGTTGATTTTTGCAGATGCATCATAGTTTTGTAACTCAATTTGTTCCAGACATTTTAAAACTGGTTTCATGAGAatacctccccacacacacacacaagttaagGAATAGCATTGGGAACGTCTGTGTGATTTCAGTCCCTCTAAAAGAGTGTTCAAAATGATGTgaatggaagagaggacagaatgAagggaagaagagaaggaagaagagaaggaagaagagaaggaagaagagaaggaaggggagaaggaaggggagaaggaagaagagaaggggagaaggaagaagagaaggaaggggagAAAGTGTGATGCTGCTTCTAGTATGGCTCTTCTTACTGTACTCATGTGCCTTACAGCCAGACTATGGTGCTTTTACCTTATTCTGTTATTTTTCACTTACCTTGTTGTTGCTCAACCTGCTATAAGCATGTTTTGTCCATGTGCCTTTATGTCCAATACTCCAGTTGCCATGAAAGACAGACTTTAGAAAAGAGACACAACAAGATTTAACctgacacacaaatacacaatcaTGTGAATGTGTCCTTGTGTGAATGTTGATTTGGGGCTTACATACAGATTCGCCGACCCTGGTTTTTATGATTCTATGTAATTATGTTTTTTTCTGCTCAGCTCCTGTAGTGCATCGGAATGGCCGTTGTTTGGGACACCTCTAAGCTTGTAGAAGCCATGCAGTAAGATAGTGAGGGAGTCTGGTTGTCTCCCTCACTGGTAGCATGGGTTTAAATACTGCACTGTATGGACCTTGATTTGAGGGCCTGTTTATAAACTGCTTTATTGAATGGTTAATAAACAATGTAATAATGTGAATAACTGGTTCATAAACGATGTAATCATGTTTATAAGCAGCTTATAAGCAGTCCTTCAAACGAAGTGTTAAATAGTTTTGGGGGGTATATTGAGATTCTGCTGATTTCTGAATGATGCTCTCCTTCCTCTGCTGATGTCATGTTTATGTGCCAGTGGTAACGCTCTGTCTGTAGACACTCTCCGTTGACATTGGAGAGGAAAATATTGTTATCAAACAGTTTTACACAGGCAGAACTTTATTTTCAGTATATTTCAATAGTTTTTGCAAAACAAAAATTGCCATTTGTAAATGTAAAGGCAAAAAACAACAGTCCAGCCAGTCAGGATCCCAAATAGAATGTCAAtaattcacattttttttaaagcaatatTTTAACTGTTAGACCAGTATGGACCAGTTGTGGTTTCATTCCAGTGTGGTATGACGCATGTCATCGACTAGAGATGCATTCAACTCCGCTAACGATTATAAAGCTCCCAACTCTGAGCGCCCACCAACAATCCAACTCACCAAGAATGTTCGACAACAGGAGAactgttctattctattgaaaACACTTGATTGTGTACTCTTTCTTCAACAATGACCTTGTAAGGACGAACGTTTTCTGCAAATGTTTGCAGAGTTGAATGCCAGTCTGTTTTGGTCTAGTCCAATCTGTTTCTGGGCACAATGATCCAGTAGAATCCTGACCCACACTGATGATATCATGCATCATGATGGATATTCATCGGGGGCCTGGATTGGTTGGTCAGAACAGGACATTTCTTCTCAGGAGACTGGAAAGGGCCATTGTAATTTATGCTTTATTTAGGGCAGATTTTTTAGGCCATACTGCCCTGGATTAGATTATCccgtgtgtgtggtatgtgtttTTCTGTTATTCTAGAGTGATTTGAGGTATGATTCCTATGAGAAACAGGTTTACagtcatgtttcatgtttgaCATCATTGTTTCAGAAAAGTTAGGATTTTTCTTGAGTTTGGATTTTAGCAACTCAATTGCTCAGTAAGCAAAAGTATGATACATGGAACAATGGAAGTGTTGTATTTTTATCATTATATATTTTCAATTGTTGTTGTCTTTTAAGTGCCTTATCTGTAATGTATGGGATAGCCTACCCTCTCACCTTTCTACCTTCTTCAGCTCCTCTCATCCTCATTCatcctttctccctctgtcttttgcTTCTTATTGTTGCCCACTCCTTCTACtcatccatctcctccctcattcTGAGATCCTCCCCTCACAGCCTTTCACATCCCCATTCCAACCCTCGTTCATTTGTACTAACCTTGACcaatcttcctctcttccccgTCGCTTTGGAAAAACAACAGTCACGTAATTACagtgttatttttttgtgtgtattatgATGCTTAAGTATTATCATTAATAATAAAAACAACGATCATGAATCACTACGCCAAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254077 lncRNA downstream 11004 9107510 ~ 9107836 (-) True G222467
TU254024 lncRNA downstream 19842 9097963 ~ 9098998 (-) True G222425
TU254072 lncRNA downstream 25718 9092358 ~ 9093122 (-) True G222464
TU254061 lncRNA downstream 45014 9073608 ~ 9073826 (-) True G222455
TU254037 lncRNA downstream 46222 9072161 ~ 9072618 (-) True G222435
TU254042 lncRNA upstream 40830 9162159 ~ 9163737 (-) True G222437
TU254093 lncRNA upstream 55547 9176876 ~ 9219368 (-) True G222482
TU254109 lncRNA upstream 105912 9227241 ~ 9227503 (-) True G222498
TU254112 lncRNA upstream 108115 9229444 ~ 9230327 (-) True G222500
TU254134 lncRNA upstream 124724 9246053 ~ 9247523 (-) True G222517
XM_036968026.1 mRNA downstream 403 9101425 ~ 9118437 (-) False LOC110501040
XM_036968035.1 mRNA downstream 403 9101425 ~ 9118437 (-) False LOC110501040
XM_036968038.1 mRNA downstream 403 9101425 ~ 9118437 (-) False LOC110501040
XM_036968064.1 mRNA downstream 403 9101425 ~ 9118437 (-) False LOC110501040
XM_036968059.1 mRNA downstream 404 9101425 ~ 9118436 (-) False LOC110501040
XM_036968074.1 mRNA upstream 893 9122222 ~ 9149197 (-) False LOC110500119
XM_036968084.1 mRNA upstream 968 9122297 ~ 9146453 (-) False LOC110500119
XM_036968088.1 mRNA upstream 968 9122297 ~ 9146864 (-) False LOC110500119
XM_036968081.1 mRNA upstream 968 9122297 ~ 9150991 (-) True LOC110500119
XM_036968109.1 mRNA upstream 39654 9160983 ~ 9222948 (-) False LOC110508553
TU254025 other downstream 467 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 23624 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 23704 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 169653 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 197251 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 373467 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 409845 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 440416 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 496296 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 551114 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile