RNA id: TU254134


Basic Information

Item Value
RNA id TU254134
length 1089
lncRNA type intronic
GC content 0.40
exon number 2
gene id G222517
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9246053 ~ 9247523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctggataggtgcgcgctcacggctcactcaaatagaccccgccacagatcacagattaactgatttaccatggcaactagagccgcgtacttttccccgtcggaagcacaaatcctcatggaggcatacgaggaggtaaaagatataattaagaagaaaggcaacaccgccaatgtgataaagcaaagagaaaaagcgtggcaaagtattgcagaccgcctgaatgccaggtcaaaatcaaatacaagaacattctgcagaatggtatggtccctgactaatatttaacaaagcacaagcatatattGTGGGGCCTTCAccagccatggactgggacaatccggcaatcttccctgatgacgacagtggtcggctgctgagggaccaatatgtgttgaattattttagttagtatgtgtgctttcaattttggttaaatatgtcctgcggtggcagaggaatttgggtttttttgggttcgttttttgacgaatttggcctcttatgatgtttgtgcggtatactgtgtgtaatacaaggctgcagggaggctactgcatccattcatttgtctgttcagttgatgtgtatggatttgtcctgcatttattttagtgtgcagacatgcagggtgtgttatatacagacctttgaatgtgtatgtatcattttgtataatatgcttggattctgtgctttccatcttgtagagtcactgtgacttcagtttcgaaaggagctgatggtttacctgctttgttttgtccttattcaataaaggaacataatgttacacattgtgtttttatattcatatggaatgtgtatttgtttatatgacagagtactagggccacactgaagaaaaaggataaagtcataaatttatgaggctggttctttctgcagaaaagctacatattgttcttacagttttgatacttatgacaatgtgatacttaatattctggcacatcagcatgtctttgtttatgaaaccatactgaagtacaatttcacgaaatgccccacacctgtcattttaacaactgtcctcctttaaaacaactggttacaatattatgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254112 lncRNA downstream 15726 9229444 ~ 9230327 (-) True G222500
TU254109 lncRNA downstream 18550 9227241 ~ 9227503 (-) True G222498
TU254093 lncRNA downstream 26685 9176876 ~ 9219368 (-) True G222482
TU254042 lncRNA downstream 82316 9162159 ~ 9163737 (-) True G222437
TU254016 lncRNA downstream 124724 9118840 ~ 9121329 (-) False G222423
TU254135 lncRNA upstream 5198 9252721 ~ 9253005 (-) True G222518
TU254137 lncRNA upstream 6878 9254401 ~ 9254901 (-) True G222519
TU254140 lncRNA upstream 27682 9275205 ~ 9277305 (-) True G222522
TU254148 lncRNA upstream 46066 9293589 ~ 9293829 (-) True G222529
TU254151 lncRNA upstream 52328 9299851 ~ 9300060 (-) True G222532
XM_036968106.1 mRNA downstream 14095 9160983 ~ 9231958 (-) False LOC110508553
XR_005040485.1 mRNA downstream 14095 9160983 ~ 9231958 (-) True LOC110508553
XM_036968098.1 mRNA downstream 14096 9160983 ~ 9231957 (-) False LOC110508553
XM_036968109.1 mRNA downstream 23105 9160983 ~ 9222948 (-) False LOC110508553
XM_036968081.1 mRNA downstream 95062 9122297 ~ 9150991 (-) True LOC110500119
XR_005040492.1 mRNA upstream 72123 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA upstream 72336 9319859 ~ 9322368 (-) False LOC118945333
XR_005040493.1 mRNA upstream 72336 9319859 ~ 9322368 (-) False LOC118945333
XM_036968149.1 mRNA upstream 99628 9347151 ~ 9371934 (-) False LOC110520816
XR_005040494.1 mRNA upstream 128976 9376499 ~ 9390272 (-) False rprd2b
TU254025 other downstream 127680 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 150837 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 150917 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 296866 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 324464 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 247273 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 283651 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 314222 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 370102 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 424920 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile