RNA id: TU254148



Basic Information


Item Value
RNA id TU254148
length 241
lncRNA type intronic
GC content 0.45
exon number 1
gene id G222529
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9293589 ~ 9293829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtatgtaaagaatgataaggcaagaaaagattacaaaatgaagctccttatggaaaatgggaacatcagcaaccttatcttccacacaaaccatcccctggcatggcacagtgctatattagcacactacccctttgttaagagagggggtgttaacgaggggtggaaactcagaatacttgataacgaggactctgagtcagctaatataaacctctataagtctggaacagtaatgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU254140 lncRNA downstream 16284 9275205 ~ 9277305 (-) True G222522
TU254137 lncRNA downstream 38688 9254401 ~ 9254901 (-) True G222519
TU254135 lncRNA downstream 40584 9252721 ~ 9253005 (-) True G222518
TU254134 lncRNA downstream 46066 9246053 ~ 9247523 (-) True G222517
TU254112 lncRNA downstream 63262 9229444 ~ 9230327 (-) True G222500
TU254151 lncRNA upstream 6022 9299851 ~ 9300060 (-) True G222532
TU254159 lncRNA upstream 11885 9305714 ~ 9305921 (-) True G222538
TU254160 lncRNA upstream 12600 9306429 ~ 9306744 (-) True G222539
TU254161 lncRNA upstream 13397 9307226 ~ 9307479 (-) True G222540
TU254169 lncRNA upstream 22324 9316153 ~ 9316521 (-) True G222545
XM_036968106.1 mRNA downstream 61631 9160983 ~ 9231958 (-) False LOC110508553
XR_005040485.1 mRNA downstream 61631 9160983 ~ 9231958 (-) True LOC110508553
XM_036968098.1 mRNA downstream 61632 9160983 ~ 9231957 (-) False LOC110508553
XM_036968109.1 mRNA downstream 70641 9160983 ~ 9222948 (-) False LOC110508553
XM_036968081.1 mRNA downstream 142598 9122297 ~ 9150991 (-) True LOC110500119
XR_005040492.1 mRNA upstream 25817 9319646 ~ 9322368 (-) False LOC118945333
XR_005040491.1 mRNA upstream 26030 9319859 ~ 9322368 (-) False LOC118945333
XR_005040493.1 mRNA upstream 26030 9319859 ~ 9322368 (-) False LOC118945333
XM_036968149.1 mRNA upstream 53322 9347151 ~ 9371934 (-) False LOC110520816
XR_005040494.1 mRNA upstream 82670 9376499 ~ 9390272 (-) False rprd2b
TU254025 other downstream 175216 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 198373 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 198453 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 344402 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 372000 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 200967 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 237345 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 267916 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 323796 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 378614 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile