RNA id: TU253756


Basic Information

Item Value
RNA id TU253756
length 289
lncRNA type antisense_over
GC content 0.54
exon number 3
gene id G222246
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9347489 ~ 9360744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGTACTGGGCCAGCTGTGCAGAGCGGATCTTCTTATTTAAGGTGGCACCATGGTCATCATCCGCGTCAGCCATGAAGCCAGCCTCGCGGAACTGTCGGACCACCTGTTGTGCATACGACTCACTACCTCCCCCTACAGGAATAATCATGACCTGCGCTGGAGACAACCACAGAGGCCATTTCCCTGAAAAATTCTCAGCCAATATAGCGATCATGCGTTCCAGTGATCCCAGAACAGCTCTGTGGACCATCACTGGTCTGTgggtctctccatcccccctgagagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253727 lncRNA upstream 34276 9312997 ~ 9313213 (+) True G222218
TU253718 lncRNA upstream 46880 9300356 ~ 9300609 (+) True G222212
TU253717 lncRNA upstream 47260 9300016 ~ 9300229 (+) True G222211
TU253715 lncRNA upstream 51094 9296177 ~ 9296395 (+) True G222209
TU253714 lncRNA upstream 53582 9293641 ~ 9293907 (+) True G222208
TU253788 lncRNA downstream 56512 9405208 ~ 9405735 (+) True G222275
TU253789 lncRNA downstream 57352 9406048 ~ 9406382 (+) True G222276
TU253794 lncRNA downstream 68297 9416993 ~ 9417202 (+) True G222281
TU253795 lncRNA downstream 75511 9424207 ~ 9424467 (+) True G222282
TU253797 lncRNA downstream 80115 9428811 ~ 9431800 (+) True G222284
LOC110520813 mRNA upstream 359643 8982594 ~ 8987846 (+) False LOC110520813
XM_036967958.1 mRNA upstream 408791 8932771 ~ 8938698 (+) True LOC110517169
XR_005040472.1 mRNA upstream 421432 8898021 ~ 8926057 (+) True LOC118945318
LOC110520801 mRNA upstream 435179 8906566 ~ 8912310 (+) False LOC110520801
LOC110516768 mRNA upstream 468836 8865764 ~ 8878653 (+) False LOC110516768
XM_036968162.1 mRNA downstream 114641 9463337 ~ 9483086 (+) False LOC110520819
XM_036968160.1 mRNA downstream 114642 9463338 ~ 9483086 (+) True LOC110520819
XM_036963772.1 mRNA downstream 136904 9485600 ~ 9486125 (+) True LOC118944441
XM_036968166.1 mRNA downstream 141637 9490333 ~ 9508263 (+) False LOC110520820
XM_036968170.1 mRNA downstream 141638 9490334 ~ 9508263 (+) False LOC110520820
TU253587 other upstream 279338 9067146 ~ 9068151 (+) True G222102
TU253570 other upstream 311656 9035358 ~ 9035833 (+) True G222089
TU252851 other upstream 438761 8906618 ~ 8908728 (+) True G221526
TU252867 other upstream 483513 8861500 ~ 8863976 (+) True G221539
TU252844 other upstream 495926 8847836 ~ 8851563 (+) False G221525
TU253800 other downstream 96351 9445047 ~ 9445704 (+) True G222287
TU253820 other downstream 153908 9502604 ~ 9506786 (+) False LOC110520820
TU253887 other downstream 257609 9606305 ~ 9611139 (+) True G222345
TU253897 other downstream 331064 9679760 ~ 9681752 (+) True G222353
TU254395 other downstream 554416 9903112 ~ 9913098 (+) True sphk2

Expression Profile