RNA id: TU254200


Basic Information

Item Value
RNA id TU254200
length 244
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G222573
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9401623 ~ 9401866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtaaatttacaaacagaaaaccacattttcgtaccctacaaaaagaaattgaactgtattttaagacggttaaatgctctactaacaaaaaagctgttagaattgtaagtatatgcatgtcccttaaggtccttgtgtaattgtaatgtgatattgtatcccctagctcgattgtctattgtttgtaatctatgtatgcttgtgttccctcatgtgatttatgtattgatttgaaattaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254173 lncRNA downstream 12428 9319354 ~ 9389195 (-) True LOC118945333
TU254119 lncRNA downstream 52851 9347194 ~ 9348772 (-) True LOC110520816
TU254171 lncRNA downstream 80179 9319354 ~ 9321444 (-) False LOC118945333
TU254174 lncRNA downstream 82300 9317833 ~ 9319323 (-) True G222547
TU254169 lncRNA downstream 85102 9316153 ~ 9316521 (-) True G222545
TU254201 lncRNA upstream 271 9402137 ~ 9402559 (-) True G222574
TU254203 lncRNA upstream 2801 9404667 ~ 9404887 (-) True G222576
TU254206 lncRNA upstream 4510 9406376 ~ 9406682 (-) True G222579
TU254209 lncRNA upstream 9611 9411477 ~ 9411703 (-) True G222582
TU254213 lncRNA upstream 22313 9424179 ~ 9424465 (-) True G222586
XM_021589177.2 mRNA downstream 501 9390287 ~ 9401122 (-) True LOC110508575
XR_005040494.1 mRNA downstream 11351 9376499 ~ 9390272 (-) False rprd2b
XM_021589148.2 mRNA downstream 11351 9376500 ~ 9390272 (-) False rprd2b
XM_021589157.2 mRNA downstream 11351 9376500 ~ 9390272 (-) False rprd2b
XM_021589164.2 mRNA downstream 11351 9376500 ~ 9390272 (-) True rprd2b
XM_021589190.2 mRNA upstream 44398 9446264 ~ 9451249 (-) True LOC110508582
XM_021589228.2 mRNA upstream 114042 9515908 ~ 9525313 (-) False LOC110508594
XM_036968185.1 mRNA upstream 114042 9515908 ~ 9525313 (-) True LOC110508594
XM_021589204.2 mRNA upstream 127008 9528874 ~ 9534145 (-) False LOC110508584
XM_021589213.2 mRNA upstream 127008 9528874 ~ 9551641 (-) False LOC110508584
TU254025 other downstream 283250 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 306407 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 306487 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 452436 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 480034 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 92930 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 129308 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 159879 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 215759 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 270577 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile