RNA id: TU254122


Basic Information

Item Value
RNA id TU254122
length 3052
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G222505
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9441801 ~ 9444852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgtgggagaacttgcacaattggtggctgactaaattcttttttgccccactgtatatatgacaTTGATTTTAGCGTTGCCAAATTGGCTTAGTCTCGTAGTGAGGAGCCTATAAAACCTAGCTAGCTTCATAAACATTTTTGGGAATTCTGAAATGTATTGCAATAAATGACCAAACTAtaaaactagctagccagctatggataactgtagctagctagctacgttagcttGCTAGATACATAAATAGCTGTGGATTGGTTGTTTTTAAGCTCAACTTCAATATTTCCACTAAGGATGTTGCCTCCGATCATCACTCTCTAATTTGAATTTGGACTGCAGCCATGGGTTTAGGTGCTGATGAGTTTCCTTAATGATGGATCTTTTGCAACTACCTAAACGCAATTAGGACCATTAATGAAAATGATATCTGAGAGACTACAGTTATTACAACGAGGGCAGAATGTGTCCTTGTGAATCATAATCACAGTTCCATAACAATCAGATTTTTTTGCACAAATAGTGGTTGTAGATTGGAAGGTTGGTAAGCACCTCTTATAGCCCATCGCTTGTTTATAGAATATTGGATCTCTGATTGACCGAATGGTATACTCTCTTACTCCACTTAAGAAAAGGTAAATGCCACTATGCAAATTTAATCGAAACGCTGTTGGCTTAGGAATATTTGGGATTCAGGTGGTTGGAGGCAAGGAGGTGACGAGGAGAGGATGGTTAGAAGGACAGGTGGAATAAGATTTGGGGATTAAGGATAGTTATATTCCTGGAATCTCCTCAGAGATGATGCTTCCAGTGaataacagcagacagacagttcaaTAGACCGAGGCATTACGGATAGAAGTGAGGAATAATCATTAGACTACTGAATGACCTCTAGAGCTGAATAACATCTAAGAGGACGTGGCAGGGACCTCTACTGAAGTCTAAAGAGGTTTAGAATCGATTCAATGTCAATCCGTCAACATGACACAATCTGTTTGTGAAGACGAATGCAAGGTGTTTTGGGCGAAGATCAATTATGACTGTGAAACGAATGAACCACAACTGGGTTTTATTCTGTGTGGAGAAATGTGAAGCGGGTTATCCGTTAAACAGTAAATCACATTTCAATGGCCTAACCGGTAGGGGATAGAATACCAAACAGACCTTAGATCAGCTTCTAGGGACAACTTAATCCTTTAAATGGCTCAGTGAGAGACTCTAAAGACCACCCTGAGAGAAGAGtccactcacagacagacagagacagacatcctGTTTATTTATTCACATGTTGACTTGACAACGCTGCATTtatttattacctttatttattaATTGGCAGCTGTGTTTCTCTCTTTGAACTTACAATTGGTtgactgattggttgactgaTGCTCTTGGGAAAGTTGCTGTACAGCGGTTTGTTTGTGGTTTTTACTGTTATGATGGGacaaatttttttgggggggatgatTGGACCTTTGGACTATTGTGCCTTTACCAAATAGGATGTGTACAAAAAACAAAGCATTTTCTACTGCATTTTGATAGTTTGCTTGTCTTTCTTAATAGCACAGTGCACAATCAGTCGAATAACACAGTACACAACGCCTAATTCCTGCCTTCAATCTCTTATCTGGCTTCCAGGGGTCTGTTGGGCAAAACTAGCTACCTACAGATCCCACAACAGCAAGGCAACCTCTACTCCAAGCTGTGCAGTGGTCATGTGTACAACACAATAGTATTCTATACATATACATCGTAGTCTTCTATGAACTAACGACAGTGGctaatttatttcagtttttagaTTGGCAGTTGCCTCTTCTCCTGGGTGTATTTTATAGTTGATTATATAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGGGTGTATTTTATAGTTGATTATGTAGGTCTGACTGGAGGATATGATCAGCGCTTGCTATCTCCTGTGTGCTTCTTGGCGCTCGTCAAACTTGAAAAACGTGAGGATCAGAGCTAAAAGGGAGACAGTATGAATATTTATTTTGCACCATCATCGTAAGCTGCTATACATAATAGGACTAAAACATGATTGAAATATTCCTCATAACAAATCATTAATACACATGTATTTACTAATGAAACATATGCCATTCAGCAGAcgttttatccaaagtgacttaacAGTCATGTGTGAATAcatttttacatatgggtggtccctggaatcaaacccactatcctggcattgcaagcaccatgctctaccaactgagctccagAGGAAATAACTGGTGTACATGATACAGGGTTTACAAAGAGTTTACTTATACCTAATCAACTGTTTATATGCAGAGCTTCCAGTAAAGCACTGCTAAAACAAGTTCATATGGTTGCATCCATACTCCCTATAGCTTTCTCCAAGGAGAGCCACAACTGAACACACAATCACTGGTAGCCTCCATGTTACCTAACTACTGTCTTTACTTGGGGCAGGGGGATGTTTTTATGCTTGAGGTATAAGTTGCTCTTAACCACAGGTCTATGATCAGATTGTTCCTACCCCCAATCCTAACGTTTATCATTAGGGTTTGAAAACACACCTGACCCCGGGCCTGTGGTTAAGGGCCACTTCTACCTACTTGTGTTTTTTATACAGCTATTTTGTGACAGAGAAACTGATTGCACAGATTTTTGTGATCTCTTTTCCATGTATGTTTTCTACTGCAGAGACCACCGCTGATTGGTCAGAAATAATATGTCTTGTTTATTTCAACTGCCTTTTTATATCTTAGTAGATGCTGTACTCaccccctctactcctccctcctcccctctatccttctccctccatcctccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254213 lncRNA downstream 17336 9424179 ~ 9424465 (-) True G222586
TU254209 lncRNA downstream 30098 9411477 ~ 9411703 (-) True G222582
TU254206 lncRNA downstream 35119 9406376 ~ 9406682 (-) True G222579
TU254203 lncRNA downstream 36914 9404667 ~ 9404887 (-) True G222576
TU254201 lncRNA downstream 39242 9402137 ~ 9402559 (-) True G222574
TU254128 lncRNA upstream 185 9445037 ~ 9445702 (-) True G222511
TU254234 lncRNA upstream 29188 9474040 ~ 9476900 (-) True G222600
TU254246 lncRNA upstream 50974 9495826 ~ 9496853 (-) True G222607
TU254298 lncRNA upstream 150168 9595020 ~ 9595330 (-) True G222657
TU254299 lncRNA upstream 150853 9595705 ~ 9599657 (-) True G222658
XM_021589177.2 mRNA downstream 40679 9390287 ~ 9401122 (-) True LOC110508575
XR_005040494.1 mRNA downstream 51529 9376499 ~ 9390272 (-) False rprd2b
XM_021589190.2 mRNA upstream 1412 9446264 ~ 9451249 (-) True LOC110508582
XM_021589228.2 mRNA upstream 71056 9515908 ~ 9525313 (-) False LOC110508594
XM_036968185.1 mRNA upstream 71056 9515908 ~ 9525313 (-) True LOC110508594
XM_021589204.2 mRNA upstream 84022 9528874 ~ 9534145 (-) False LOC110508584
XM_021589213.2 mRNA upstream 84022 9528874 ~ 9551641 (-) False LOC110508584
TU254025 other downstream 323428 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 346585 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 346665 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 492614 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 520212 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 49944 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 86322 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 116893 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 172773 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 227591 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile