RNA id: TU254128



Basic Information


Item Value
RNA id TU254128
length 666
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G222511
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9445037 ~ 9445702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggactcaaatcctgcagtgccagacttgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttctggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttttgcaaagggaccaggacgactgatccgtgcaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggcattaaagatgaaatgtggctggatgacaatgatcccaaacacaccgcccgggcaatgaaggagtgagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgctcagcaacagccccaaaacatcactgctctagaggaaatCTGCATGGcggaatgggtcaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaa

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU254122 lncRNA downstream 185 9441801 ~ 9444852 (-) True G222505
TU254213 lncRNA downstream 20572 9424179 ~ 9424465 (-) True G222586
TU254209 lncRNA downstream 33334 9411477 ~ 9411703 (-) True G222582
TU254206 lncRNA downstream 38355 9406376 ~ 9406682 (-) True G222579
TU254203 lncRNA downstream 40150 9404667 ~ 9404887 (-) True G222576
TU254234 lncRNA upstream 28338 9474040 ~ 9476900 (-) True G222600
TU254246 lncRNA upstream 50124 9495826 ~ 9496853 (-) True G222607
TU254298 lncRNA upstream 149318 9595020 ~ 9595330 (-) True G222657
TU254299 lncRNA upstream 150003 9595705 ~ 9599657 (-) True G222658
TU254305 lncRNA upstream 166962 9612664 ~ 9623056 (-) True G222661
XM_021589177.2 mRNA downstream 43915 9390287 ~ 9401122 (-) True LOC110508575
XR_005040494.1 mRNA downstream 54765 9376499 ~ 9390272 (-) False rprd2b
XM_021589190.2 mRNA upstream 562 9446264 ~ 9451249 (-) True LOC110508582
XM_021589228.2 mRNA upstream 70206 9515908 ~ 9525313 (-) False LOC110508594
XM_036968185.1 mRNA upstream 70206 9515908 ~ 9525313 (-) True LOC110508594
XM_021589204.2 mRNA upstream 83172 9528874 ~ 9534145 (-) False LOC110508584
XM_021589213.2 mRNA upstream 83172 9528874 ~ 9551641 (-) False LOC110508584
TU254025 other downstream 326664 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 349821 9093876 ~ 9095216 (-) True G222465
TU254073 other downstream 349901 9093180 ~ 9095136 (-) False G222465
TU253486 other downstream 495850 8938896 ~ 8949187 (-) True G222023
TU253489 other downstream 523448 8912435 ~ 8921589 (-) False G222023
TU254242 other upstream 49094 9494796 ~ 9496853 (-) False G222607
TU254262 other upstream 85472 9531174 ~ 9551240 (-) True LOC110508584
TU254285 other upstream 116043 9561745 ~ 9562965 (-) True LOC110520821
TU254309 other upstream 171923 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 226741 9672443 ~ 9673439 (-) True LOC118944443

Expression Profile