RNA id: TU254299


Basic Information

Item Value
RNA id TU254299
length 2437
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G222658
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9595705 ~ 9599657 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacaactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatggaggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatggaggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacaactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggtgttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacataactgtgtcaactaggacatgggggttgacagtccacagcaacatgAGGATCATTCTGCCCTGAAACAGTTGCTGTTCCTATTCCTCTTTTGTTCTTTTTTCTCAAGTGTCTCTGAACCTCAGTGGTAGTTTTACCTCTCCACCTCTGGAGGTCATTCTCACCAGTTGTGGTGAGGCTGGCTGAGGTGGTGGACTGAGTGAGAGGATGGGAGTTGGATGGCTCACTGGTAGACTGGGTGACTCTTTTGTTGTTCTCTCTGGAGTAGGTGACTCTGCAAAATCCTGAAGGTGTCGCCTGTTTCTCTGAGCGATGGTGCCGTGTTCAGTTTCCACAACGTAGGATCTCGGCTCTGGATATTTGCTGATGACAACTGCTGGTGTTTTCCATCTTTTCTCTCCGTCCAGATTGACTCTGACACCCTGTCCAGGGTGTAATTCCAGTAGGGGTGTACTGTATGCCTCCTGTTATAGAAGAACCGGTAAGCTTGTTTGGCTTTCTGGTCCTTCTGTTTAACAGTGTTATGGCTGAAGCGTTTTGGTTGGAGTTTCCCATCCAGCACGGGGACCGTGCTGGCTAGTGGTAGTGGGCAGGTGAGCTATTTCTGtgtccctagaatagtagtcACCACTATGTGGCATTTCTAatgtccctagaatagtagtcaccactatgtggtatttatatgtccctagaatagtagaacaccactatgtggtatttctatgtccctagaatagtcgtcaccactatgtggtatttctaatgtccctagaatagtagaacaccactatgtggtatttctatgtccctagaatagtagtcCACCACTATGAGGTATTtctatgtccctagaatagtagtcCACCACTATGAGGTATTtctatgtccctagaatagtagtcaccactatgtggtatttctaatgtccctagaatagtagaacaccactatgtggtatttctatgtccctagaatagtagtcaccactatgtggtatttctatgtccctagaatagtagtcCACCACTATGAGGTATTtctatgtccctagaatagtagtcCACCACTATGAGGTATTtctatgtccctagaatagtagtccaccactatgtggtatttctatgtccctagaatagtagtccaccactatgtggtatttctatgtccctagaatagtagtcCACCACTATGAGGTATTTCTTGCCCTCGAGCTCACGCAGGTCGGCTGCGATCTTCAGCCACAGACCCTTAGGTAAAGGTGTCATGACAAGTGCTTCTCTCTTTTGAGTTGGTTTGTTCTCTGTACAGAACCTGCATGACAGAACCTGCATGACTTCACCTTTCTGGCGAAGTGGACGCTGATCTGCTCTGACTGGCGCAGGATTTGTGTTGCCCTCTCCAGTGTCAAGTCTGGCTCCAGCTGTagcttttgtgaaacatcactgTCCATCATGCCAATCACAATACTGTCCCTTATTTGTTTGTCCTTAGTAGTTCCAAACTTGCAGTATCATACAGATTCCTCACAAAAGATTCCACTGTCTGAATGCGCCTTTCTGAATGCGCTGTGGCACAAAATGTTCATTCCGTTTTTCAATCATGCATTGTAGACAATATCTGCATTTTTCCCCATTGCATAAAGTTGCACCACATCGGGCTCCTTTTCCAGTTTCAATGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254298 lncRNA downstream 375 9595020 ~ 9595330 (-) True G222657
TU254246 lncRNA downstream 98852 9495826 ~ 9496853 (-) True G222607
TU254234 lncRNA downstream 118805 9474040 ~ 9476900 (-) True G222600
TU254128 lncRNA downstream 150003 9445037 ~ 9445702 (-) True G222511
TU254122 lncRNA downstream 150853 9441801 ~ 9444852 (-) True G222505
TU254305 lncRNA upstream 13007 9612664 ~ 9623056 (-) True G222661
TU254308 lncRNA upstream 20554 9620211 ~ 9622934 (-) True G222662
TU254320 lncRNA upstream 37592 9637249 ~ 9637907 (-) True G222672
TU254328 lncRNA upstream 57476 9657133 ~ 9659694 (-) True G222680
TU254335 lncRNA upstream 76281 9675938 ~ 9676294 (-) True G222685
XM_036963782.1 mRNA downstream 1051 9559133 ~ 9594654 (-) False LOC110520821
XM_036968208.1 mRNA downstream 44062 9528874 ~ 9551643 (-) False LOC110508584
XM_021589213.2 mRNA downstream 44064 9528874 ~ 9551641 (-) False LOC110508584
XM_021589204.2 mRNA downstream 61560 9528874 ~ 9534145 (-) False LOC110508584
XM_036968185.1 mRNA downstream 70392 9515908 ~ 9525313 (-) True LOC110508594
XM_036968221.1 mRNA upstream 3544 9603201 ~ 9636842 (-) False LOC110536519
XM_036968212.1 mRNA upstream 3544 9603201 ~ 9636857 (-) False LOC110536519
XM_036968218.1 mRNA upstream 3544 9603201 ~ 9636857 (-) False LOC110536519
XM_036968223.1 mRNA upstream 3544 9603201 ~ 9641233 (-) True LOC110536519
NM_001124264.1 mRNA upstream 41981 9641638 ~ 9653952 (-) True cyp11b
TU254285 other downstream 32740 9561745 ~ 9562965 (-) True LOC110520821
TU254262 other downstream 44465 9531174 ~ 9551240 (-) True LOC110508584
TU254242 other downstream 98852 9494796 ~ 9496853 (-) False G222607
TU254025 other downstream 477332 9110973 ~ 9118373 (-) True LOC110501040
TU254075 other downstream 500489 9093876 ~ 9095216 (-) True G222465
TU254309 other upstream 17968 9617625 ~ 9622934 (-) False G222662
TU254332 other upstream 72786 9672443 ~ 9673439 (-) True LOC118944443
TU254339 other upstream 80251 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other upstream 80251 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other upstream 80251 9679908 ~ 9683371 (-) False LOC110534283

Expression Profile