RNA id: TU254320



Basic Information


Item Value
RNA id TU254320
length 231
lncRNA type intronic
GC content 0.53
exon number 2
gene id G222672
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9637249 ~ 9637907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctgaccttaaccctgaccgtaactccaacctaaccctgaccttaaccctgaccttaaccctgaccgtaactccaacctaaccctgaccttaaccctgaccctaaccctgaccttaaccctgaccgtaactccaacctaaccctggccttaaccctgaccttaaccttgACCGTAaccccaacctaaccctgaccttaaccctaaccgcAACCCTGACCGTAaccccaac

Function


GO: NA

KEGG:

id description

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU254305 lncRNA downstream 14193 9612664 ~ 9623056 (-) True G222661
TU254308 lncRNA downstream 14315 9620211 ~ 9622934 (-) True G222662
TU254299 lncRNA downstream 37592 9595705 ~ 9599657 (-) True G222658
TU254298 lncRNA downstream 41919 9595020 ~ 9595330 (-) True G222657
TU254246 lncRNA downstream 140396 9495826 ~ 9496853 (-) True G222607
TU254328 lncRNA upstream 19226 9657133 ~ 9659694 (-) True G222680
TU254335 lncRNA upstream 38031 9675938 ~ 9676294 (-) True G222685
TU254336 lncRNA upstream 38573 9676480 ~ 9676700 (-) True G222686
TU254345 lncRNA upstream 42001 9679908 ~ 9683371 (-) False LOC110534283
TU254312 lncRNA upstream 94248 9732155 ~ 9735857 (-) True G222665
XM_036968212.1 mRNA downstream 392 9603201 ~ 9636857 (-) False LOC110536519
XM_036968218.1 mRNA downstream 392 9603201 ~ 9636857 (-) False LOC110536519
XM_036968221.1 mRNA downstream 407 9603201 ~ 9636842 (-) False LOC110536519
XM_036963782.1 mRNA downstream 42595 9559133 ~ 9594654 (-) False LOC110520821
XM_036968208.1 mRNA downstream 85606 9528874 ~ 9551643 (-) False LOC110508584
NM_001124264.1 mRNA upstream 3731 9641638 ~ 9653952 (-) True cyp11b
XM_036968228.1 mRNA upstream 16386 9654293 ~ 9656911 (-) True LOC118945353
XM_036963791.1 mRNA upstream 27955 9665862 ~ 9673388 (-) False LOC118944443
XM_036968235.1 mRNA upstream 41851 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA upstream 41851 9679758 ~ 9689081 (-) False LOC110534283
TU254309 other downstream 14315 9617625 ~ 9622934 (-) False G222662
TU254285 other downstream 74284 9561745 ~ 9562965 (-) True LOC110520821
TU254262 other downstream 86009 9531174 ~ 9551240 (-) True LOC110508584
TU254242 other downstream 140396 9494796 ~ 9496853 (-) False G222607
TU254025 other downstream 518876 9110973 ~ 9118373 (-) True LOC110501040
TU254332 other upstream 34536 9672443 ~ 9673439 (-) True LOC118944443
TU254339 other upstream 42001 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other upstream 42001 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other upstream 42001 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other upstream 42001 9679908 ~ 9683371 (-) True LOC110534283

Expression Profile


TU254320 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

TU254320 Expression in each Bioproject

Bar chart with 12 bars.
TU254320 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.