RNA id: TU254392


Basic Information

Item Value
RNA id TU254392
length 1684
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G222724
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9766126 ~ 9767809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTCATATCAATCAATGTGTTTTATTTGCTCTACAGTGCCATTCTTTTTCACATGGAAGTGCTTTCTGCCACAAACAGTAGTGCTTTTTTTGTGATACAACAGAGAAGGATGGGAAACGAATACAGTGGTATCTGTAGAAAAAAATAATAGAGCACAGCTAGTAACAACCTGATTCCACTAACATACATCCCAACATACCTTGACCTGCAATATCACAATTTTATTCTGGAATCTAATAAAGCAACCAACCAGGAAGTCATCAAGTAATCCATCTggctatgttgttgttgtgtgggatgcgtaaaaaaaaaagactaaCACAGAGGTCAGAGTCCTGGTGGTCAGGGTTCAAGTTACCCCCCCACAGGAAGTGGAGCAGACAGGACTGGCCATTAACCTATAAATAGAACTCGGTGGCAATGGAGACATAGAAAAATAAGGAAAGACACGGAAATTGAATAAATGTCAATAACACCAACTATAACCGATCAATATGGTTGTAAATCATATCATGGAATCTGCTTTAAAAGGTGAAATATCCATGTTTCCTGTTCaaaaggtcagtgtgtgtgaagtGCTTctttctatatacagtatgtgacgTCTTAAAATGCCATTTCAATAGCAGTTTGTGTGCTTTTACAGTGCTTTGTATGTACGTAGTGTCCATAGTGTCAACTTACTTCTGTGCAAAGATGCAAGTCAAAGTTTCAGAGTTGTCTGTCCTTGTAGTAGGTAGAACATTTACAGCCCTGTTGTATCATCTAGTGGTCAAGACAATTGTTCAACACTTTACATATCATGTAGATTCATGATATATTGTGCATGGTATCTGCTGGTAAGGTGCATAACCCAATGATTTTGAATTGTAATACTGAAAAAGGAAACTGAATAGATTCTATTTGAAATAATGACTTAGTTATTATGTAATACCACACATGGCAGtttaacttaatgtaaagtgtgacTAAATATTGTGGTAGTAGCGGCATAGAAGTTAGAAGTCTTCATCTCTCAATAACATCAGTATACATATTTCAGAAACCATCACTTTCAGAAGAGTTACACGATTCAACAAAATAGACAGGCAATAAAAACATCTAATTTGAACATTGCAAATCTTGTGCTAGTTATAGAATAACACCATAGACTTCTTTTTGAAGGCACCGCCCAATGCATTAGTCTTCCACATAGTGGGAGACAGACACCAACCAAAGCAGAATCATAGAATTCAGGATTAGTCATCCATTCTAATTCTTTGAACAGAACCTCTCTCAGAGAACAGAATGTCACAGAAATTCAATTCCTCCTCAGGTGGTTTGCCAGTGCAGTTGTGAGCCCTCACAGTTTACAATAAGAACAGGAAGCTATAGGGAGTGGTCAGGGAGGTTTTCCTTACGTAAATGTACTGCAGTGAAGTGACAGTTGTACGTTTCAGGTCCTCAGTACATGGTGGTCATGGCAGTCCAACAGGTTTACGGTCCATTTCCAGTCCCAGTTTAGGGTGCTCTGCCAAGGACTGGACACTTCCAACAATGTACCTTAAAGGTAAACTCTGCTAAATGACGTTACCACGAGTAGCACTGCAGTTATTGAGATGAGTGAGACACAGGACTTCactctcacagtcacacacacacgggtgAAAGTAGATGTCATTTCTTCTCAGTATGGGACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254312 lncRNA downstream 30269 9732155 ~ 9735857 (-) True G222665
TU254345 lncRNA downstream 82755 9679908 ~ 9683371 (-) False LOC110534283
TU254336 lncRNA downstream 89426 9676480 ~ 9676700 (-) True G222686
TU254335 lncRNA downstream 89832 9675938 ~ 9676294 (-) True G222685
TU254328 lncRNA downstream 106432 9657133 ~ 9659694 (-) True G222680
TU254670 lncRNA upstream 34635 9802444 ~ 9809481 (-) True G222961
TU254694 lncRNA upstream 69164 9836973 ~ 9838939 (-) False G222982
TU254700 lncRNA upstream 69164 9836973 ~ 9838939 (-) False G222982
TU254695 lncRNA upstream 69730 9837539 ~ 9838939 (-) True G222982
TU254720 lncRNA upstream 93803 9861612 ~ 9862114 (-) True G223001
XM_036968264.1 mRNA downstream 52938 9708802 ~ 9713188 (-) True LOC110536579
XM_036968235.1 mRNA downstream 77045 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA downstream 77045 9679758 ~ 9689081 (-) False LOC110534283
XM_036968238.1 mRNA downstream 77045 9680256 ~ 9689081 (-) False LOC110534283
XM_036963791.1 mRNA downstream 92738 9665862 ~ 9673388 (-) False LOC118944443
XM_036968352.1 mRNA upstream 175272 9943081 ~ 9960032 (-) False LOC110508630
XM_036968360.1 mRNA upstream 175272 9943081 ~ 9960032 (-) True LOC110508630
XM_021589422.2 mRNA upstream 233636 10001445 ~ 10002941 (-) False LOC110508696
XM_036968375.1 mRNA upstream 251504 10019313 ~ 10024005 (-) False LOC110508724
XM_036968377.1 mRNA upstream 256639 10024448 ~ 10047484 (-) False LOC110520824
TU254339 other downstream 82755 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other downstream 82755 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other downstream 82755 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other downstream 82755 9679908 ~ 9683371 (-) True LOC110534283
TU254332 other downstream 92687 9672443 ~ 9673439 (-) True LOC118944443
TU254786 other upstream 233606 10001415 ~ 10002894 (-) False LOC110508696
TU254805 other upstream 245152 10012961 ~ 10014892 (-) True G223070
TU254793 other upstream 252839 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other upstream 252839 10020648 ~ 10023185 (-) True LOC110508724
TU255954 other upstream 1303137 11070946 ~ 11073750 (-) False znf628

Expression Profile