RNA id: TU254410


Basic Information

Item Value
RNA id TU254410
length 487
lncRNA type intronic
GC content 0.42
exon number 2
gene id G222741
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9806566 ~ 9807900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttagggttagtttatgggttagggttagtttatgggtaagggtttgTTTATgagtaagggttaggagctagggttagtttatgggtaagggttaggagttagggttagtttatggtttagggttagtttatgggtaagggttaggagttagggttagtttatgggcaagggttatgagttagggttagtttatgggtaagggttaggagctagggttagtttatgggttaggattagttcatgggttagggttaggagttagggttagtttatgggttagggttaggagctagggttagtttatgggtaagggttatgagttagggttagtttatgggtaagggttaggagctagggttagtttatgggttagggttaggagctagggttagtgtatgggtaagggttaggagctagtgttagtttatgagttagggttagtttatgggtaagggttaggaattagggttagtttatgggtaaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254391 lncRNA upstream 38757 9765921 ~ 9767809 (+) False G222723
TU254390 lncRNA upstream 38757 9766013 ~ 9767809 (+) True G222723
TU253938 lncRNA upstream 103992 9702008 ~ 9702574 (+) True G222388
TU253901 lncRNA upstream 114581 9688881 ~ 9691985 (+) True LOC110536529
TU253898 lncRNA upstream 123438 9681972 ~ 9683128 (+) True G222354
TU254414 lncRNA downstream 139 9808039 ~ 9809141 (+) True G222743
TU254419 lncRNA downstream 14818 9822718 ~ 9824032 (+) True G222746
TU254428 lncRNA downstream 36321 9844221 ~ 9846407 (+) True G222752
TU254429 lncRNA downstream 36692 9844592 ~ 9849308 (+) True G222753
TU254434 lncRNA downstream 52323 9860223 ~ 9860491 (+) True G222758
XM_036968270.1 mRNA upstream 42259 9725375 ~ 9764307 (+) False LOC110536497
XM_036968273.1 mRNA upstream 42259 9725375 ~ 9764307 (+) False LOC110536497
XM_036968276.1 mRNA upstream 42259 9725375 ~ 9764307 (+) False LOC110536497
XM_036968279.1 mRNA upstream 42259 9725375 ~ 9764307 (+) True LOC110536497
XM_036968249.1 mRNA upstream 114559 9689400 ~ 9692007 (+) False LOC110536529
XM_036963801.1 mRNA downstream 78971 9886871 ~ 9888193 (+) True LOC110520822
XM_021589267.2 mRNA downstream 85361 9893261 ~ 9900476 (+) True LOC110508611
XM_036968317.1 mRNA downstream 92909 9900809 ~ 9916529 (+) False sphk2
XM_036968325.1 mRNA downstream 92909 9900809 ~ 9916529 (+) False sphk2
XM_021589316.2 mRNA downstream 118383 9926283 ~ 9933661 (+) False LOC110508641
TU253897 other upstream 124814 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 195427 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 299780 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 360862 9445047 ~ 9445704 (+) True G222287
TU253587 other upstream 738415 9067146 ~ 9068151 (+) True G222102
TU254395 other downstream 95212 9903112 ~ 9913098 (+) True sphk2
TU254560 other downstream 466225 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 503782 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 908751 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 945717 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile