RNA id: TU254720


Basic Information

Item Value
RNA id TU254720
length 503
lncRNA type intronic
GC content 0.56
exon number 1
gene id G223001
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9861612 ~ 9862114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaccacaatagtccctgtgctcaagtgtctccctgaccaccatagtccctgtgcccaagtgtctcactgaccaccatagtccctgtgcccaagtgtctccctgaccaccatagtccctgtgcccaagtgccTCCCtgaccactatagtccctgtgcccaagtctctcactgaccaccatagtccctgtgcccaagtgcctccctgaccaccatagtccctgtgcccaagtgtctccctaaccaccatagtccctgtgcccaagtgcctccctgaccaccatagtccctgtgcccaagtgccTCCCtgaccactatagtccctgtgcccaagtgtctcactgaccaccatagtccctctgcccaagtgtctcactgaccaccatagtctctgtgcccaagtgtctccctgaccaccatagtccctgtgcccaagtgtctccatgaccaccatagtccctgtgcccaagaagatcaaggtaacctgcctaaatgactactgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254694 lncRNA downstream 22673 9836973 ~ 9838939 (-) False G222982
TU254700 lncRNA downstream 22673 9836973 ~ 9838939 (-) False G222982
TU254695 lncRNA downstream 22673 9837539 ~ 9838939 (-) True G222982
TU254670 lncRNA downstream 52131 9802444 ~ 9809481 (-) True G222961
TU254392 lncRNA downstream 93803 9766126 ~ 9767809 (-) True G222724
TU254713 lncRNA upstream 16314 9878428 ~ 9882261 (-) False G222995
TU254714 lncRNA upstream 16314 9878428 ~ 9882261 (-) True G222995
TU254732 lncRNA upstream 31291 9893405 ~ 9896758 (-) True G223012
TU254730 lncRNA upstream 34957 9897071 ~ 9900478 (-) True G223011
TU254743 lncRNA upstream 45332 9907446 ~ 9908790 (-) True G223022
XM_036968264.1 mRNA downstream 148424 9708802 ~ 9713188 (-) True LOC110536579
XM_036968235.1 mRNA downstream 172531 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA downstream 172531 9679758 ~ 9689081 (-) False LOC110534283
XM_036968238.1 mRNA downstream 172531 9680256 ~ 9689081 (-) False LOC110534283
XM_036963791.1 mRNA downstream 188224 9665862 ~ 9673388 (-) False LOC118944443
XM_036968352.1 mRNA upstream 80967 9943081 ~ 9960032 (-) False LOC110508630
XM_036968360.1 mRNA upstream 80967 9943081 ~ 9960032 (-) True LOC110508630
XM_021589422.2 mRNA upstream 139331 10001445 ~ 10002941 (-) False LOC110508696
XM_036968375.1 mRNA upstream 157199 10019313 ~ 10024005 (-) False LOC110508724
XM_036968377.1 mRNA upstream 162334 10024448 ~ 10047484 (-) False LOC110520824
TU254339 other downstream 178241 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other downstream 178241 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other downstream 178241 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other downstream 178241 9679908 ~ 9683371 (-) True LOC110534283
TU254332 other downstream 188173 9672443 ~ 9673439 (-) True LOC118944443
TU254786 other upstream 139301 10001415 ~ 10002894 (-) False LOC110508696
TU254805 other upstream 150847 10012961 ~ 10014892 (-) True G223070
TU254793 other upstream 158534 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other upstream 158534 10020648 ~ 10023185 (-) True LOC110508724
TU255954 other upstream 1208832 11070946 ~ 11073750 (-) False znf628

Expression Profile