RNA id: TCONS_00030224


Basic Information

Item Value
RNA id TCONS_00030224
length 487
lncRNA type sense_over
GC content 0.45
exon number 1
gene id XLOC_014760
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 23435958 ~ 23437400 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTCTGGACCGGTATGAACTCGGCAAGGAGATTGGAGAGGGAGGATTTGGCAGCGTCTATGAAGGGAAGCGCTTGGAGGATGGCCTtgaggtgaacaatccctttaacatATATTATGTTCACTTTTTAGTGCACTTGATGTGATTATAACAGAAGTGTTGTTTTGTTGAACAGGTGGCAGTAAAAATTGCCAGAAAGCCATCGAACATGAAATACATCAACATCGTAAGTAGACTTAAACATGTAAAGGCACTGACAACAGTATATTTGGGGAAGCAACACCGCCTAACTAATCTTTCTTCTAGGCTGGTCATCCTGAGCCCCTTCCTTTAGAGATCGGCCTGTTGATACTGGCTCATAGAGGCGGCAAGGTTCCAGAGATCATTGAGCTGCTGGACTGGCAGGACCAGCAGGATCGTTACATCATGATCCTGGAACGACCTTCACCATGTGTAGATCTGTTGGACTTAATAATGTCTCTTGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030223 lncRNA downstream 424 23435958 ~ 23436487 (-) False XLOC_014760
TCONS_00030222 lncRNA downstream 25050 23410015 ~ 23411861 (-) True XLOC_014758
TCONS_00030221 lncRNA downstream 67659 23368879 ~ 23369252 (-) True XLOC_014756
TCONS_00030220 lncRNA downstream 131191 23305162 ~ 23305720 (-) True XLOC_014755
TCONS_00030219 lncRNA downstream 148791 23285194 ~ 23288120 (-) True XLOC_014754
TCONS_00030225 lncRNA upstream 88881 23526278 ~ 23526561 (-) True XLOC_014764
TCONS_00030226 lncRNA upstream 187716 23625113 ~ 23627905 (-) False XLOC_014768
TCONS_00030227 lncRNA upstream 282872 23720269 ~ 23723983 (-) False XLOC_014772
TCONS_00030228 lncRNA upstream 282872 23720269 ~ 23726829 (-) False XLOC_014772
TCONS_00030229 lncRNA upstream 285471 23722868 ~ 23723990 (-) True XLOC_014772
TCONS_00029158 mRNA downstream 17569 23418078 ~ 23419342 (-) True XLOC_014759
TCONS_00029157 mRNA downstream 54292 23381331 ~ 23382619 (-) True XLOC_014757
TCONS_00029156 mRNA downstream 67629 23368001 ~ 23369282 (-) False XLOC_014756
TCONS_00029153 mRNA downstream 187089 23136170 ~ 23249822 (-) False XLOC_014752
TCONS_00029160 mRNA upstream 13096 23450493 ~ 23452345 (-) True XLOC_014761
TCONS_00029161 mRNA upstream 31374 23468771 ~ 23470709 (-) True XLOC_014762
TCONS_00029162 mRNA upstream 50844 23488241 ~ 23489527 (-) True XLOC_014763
TCONS_00029163 mRNA upstream 87961 23525358 ~ 23526638 (-) False XLOC_014764
TCONS_00029164 mRNA upstream 111509 23548906 ~ 23550179 (-) True XLOC_014765
TCONS_00029155 other downstream 217316 23219477 ~ 23219595 (-) True XLOC_014753
TCONS_00029152 other downstream 307610 23128663 ~ 23129301 (-) True XLOC_014751
TCONS_00029151 other downstream 315984 23120398 ~ 23120927 (-) True XLOC_014750
TCONS_00029150 other downstream 322429 23114196 ~ 23114482 (-) True XLOC_014749
TCONS_00029149 other downstream 372073 23064025 ~ 23064838 (-) True XLOC_014748
TCONS_00029179 other upstream 460305 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029181 other upstream 477819 23915216 ~ 23918106 (-) True XLOC_014780
TCONS_00029186 other upstream 702383 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029188 other upstream 745378 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029189 other upstream 750197 24187594 ~ 24188743 (-) True XLOC_014788

Expression Profile

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