RNA id: TU254766


Basic Information

Item Value
RNA id TU254766
length 482
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G223043
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 9969605 ~ 9995476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttatctcgtctcttcagttcttcagtagcctccactgaccccgaggggattctccctgaggggcgtgttgtcgggttgactgtctggggaattgagaggcaggtaaaacaagcgctcactcacactctgtcgccgcgcgcttgtcctaggaaccttcttttcgttcccgttcctactcgtctggccgttcttcagtgggctcactctgccaagttagccggccaccctggcgttcggggtacgcttgcttccattcgccagcgtttttggtggcccacccgggagcatgacacgcgtcgtttcgtggctgcttgttcggtctgcgcgcagactaagtccggtaactctcctcctgccggccgtctcaggccgcttcctattccctctcgaccgtggtctcacatcgccttagattttgtcaccggactgccttcgtcagcggggaagactgttattcttacggttgtcgataggttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254715 lncRNA downstream 55228 9913214 ~ 9914377 (-) True G222996
TU254743 lncRNA downstream 60815 9907446 ~ 9908790 (-) True G223022
TU254730 lncRNA downstream 69127 9897071 ~ 9900478 (-) True G223011
TU254732 lncRNA downstream 72847 9893405 ~ 9896758 (-) True G223012
TU254713 lncRNA downstream 87344 9878428 ~ 9882261 (-) False G222995
TU254784 lncRNA upstream 3492 9998968 ~ 9999376 (-) True G223058
TU254787 lncRNA upstream 5939 10001415 ~ 10002894 (-) True LOC110508696
TU254795 lncRNA upstream 28983 10024459 ~ 10024856 (-) True LOC110520824
TU254817 lncRNA upstream 91376 10086852 ~ 10089362 (-) True G223081
TU254820 lncRNA upstream 103985 10099461 ~ 10105025 (-) True LOC110520825
XM_036968352.1 mRNA downstream 9573 9943081 ~ 9960032 (-) False LOC110508630
XM_036968360.1 mRNA downstream 9573 9943081 ~ 9960032 (-) True LOC110508630
XM_036968264.1 mRNA downstream 256417 9708802 ~ 9713188 (-) True LOC110536579
XM_036968235.1 mRNA downstream 280524 9679758 ~ 9689081 (-) False LOC110534283
XM_036968246.1 mRNA downstream 280524 9679758 ~ 9689081 (-) False LOC110534283
XM_021589422.2 mRNA upstream 5969 10001445 ~ 10002941 (-) False LOC110508696
XM_036968375.1 mRNA upstream 23837 10019313 ~ 10024005 (-) False LOC110508724
XM_036968377.1 mRNA upstream 28972 10024448 ~ 10047484 (-) False LOC110520824
XM_036968378.1 mRNA upstream 28972 10024448 ~ 10047484 (-) False LOC110520824
XM_036968380.1 mRNA upstream 28972 10024448 ~ 10047484 (-) False LOC110520824
TU254339 other downstream 286234 9679908 ~ 9683371 (-) False LOC110534283
TU254341 other downstream 286234 9679908 ~ 9683371 (-) False LOC110534283
TU254343 other downstream 286234 9679908 ~ 9683371 (-) False LOC110534283
TU254348 other downstream 286234 9679908 ~ 9683371 (-) True LOC110534283
TU254332 other downstream 296166 9672443 ~ 9673439 (-) True LOC118944443
TU254786 other upstream 5939 10001415 ~ 10002894 (-) False LOC110508696
TU254805 other upstream 17485 10012961 ~ 10014892 (-) True G223070
TU254793 other upstream 25172 10020648 ~ 10023203 (-) False LOC110508724
TU254794 other upstream 25172 10020648 ~ 10023185 (-) True LOC110508724
TU255954 other upstream 1075470 11070946 ~ 11073750 (-) False znf628

Expression Profile