RNA id: TU254497


Basic Information

Item Value
RNA id TU254497
length 601
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G222813
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10023515 ~ 10024115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctaagacactgcaactcagtgctagaggcgtcactacagaccctggttcgattccaggctgtatcacaactagccgtgattgggagtcccataaggtggcgcacaattggcccagcgtcgtccgggttaggccgtcattgtaaattataatttgttcttaactgacttgcctagttaaataaaggttgaatccCCCAAAAATAAAAGCTGGCCTCGTTGGATAACCGTGGCTATAACagcagttagctagctatgtctAGCTAGTTAAATAACAGGGAAACGTTCGCAAGTTAGCTGAAATTATACGGCACAAACTTATGAGAACTTACCTTCGGAGTTCCAAACTCCTACCGTCAAAAGAAACCCTACAAATCCAACAACTTTCGAAATGTGTTAGACGTTAAAAATGTTTGCTTATGCTATCAACGTCGCCTCTATAGGGAGTCGCAGACGAAAGGCATCACCATAAATAATCCAATGGGTGGTCAGATGTTTGTAACGTTGAGCCTTGAGTAAGGCTTTATGGGAACTGCTGTTTTTATCCGTAGTATATGCCAGTATCAGACCTGGATAAACGTGAATGGTCTTTATCTCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254453 lncRNA upstream 24741 9973761 ~ 9998774 (+) True LOC110508650
TU254482 lncRNA upstream 55745 9967478 ~ 9967770 (+) True G222799
TU254480 lncRNA upstream 58255 9964654 ~ 9965260 (+) True G222797
TU254446 lncRNA upstream 85969 9937196 ~ 9937546 (+) True G222770
TU254401 lncRNA upstream 97430 9925745 ~ 9926085 (+) True G222733
TU254499 lncRNA downstream 354 10024469 ~ 10024854 (+) True G222815
TU254525 lncRNA downstream 49427 10073542 ~ 10073772 (+) True G222838
TU254526 lncRNA downstream 49755 10073870 ~ 10074374 (+) True G222839
TU254489 lncRNA downstream 50610 10074725 ~ 10075966 (+) True G222805
TU254465 lncRNA downstream 72068 10096183 ~ 10099336 (+) True G222782
XM_036968369.1 mRNA upstream 5074 10005877 ~ 10018441 (+) False cnot3a
XM_036968368.1 mRNA upstream 5074 10006029 ~ 10018441 (+) False cnot3a
XM_036968371.1 mRNA upstream 5074 10006029 ~ 10018441 (+) False cnot3a
XM_036968373.1 mRNA upstream 5074 10006029 ~ 10018441 (+) False cnot3a
XM_036968374.1 mRNA upstream 5074 10006029 ~ 10018441 (+) False cnot3a
XM_036968385.1 mRNA downstream 53930 10078045 ~ 10094991 (+) False LOC110508764
XM_036968384.1 mRNA downstream 53932 10078047 ~ 10094991 (+) False LOC110508764
XM_036968387.1 mRNA downstream 53932 10078047 ~ 10094991 (+) False LOC110508764
XM_036968386.1 mRNA downstream 53934 10078049 ~ 10094991 (+) False LOC110508764
XM_036968388.1 mRNA downstream 57748 10081863 ~ 10094991 (+) True LOC110508764
TU254395 other upstream 110417 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 341763 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 412376 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 516729 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 577811 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 250010 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 287567 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 692536 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 729502 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 729502 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile