RNA id: TU254499


Basic Information

Item Value
RNA id TU254499
length 386
lncRNA type antisense_over
GC content 0.31
exon number 1
gene id G222815
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10024469 ~ 10024854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTATTTTCATCAAACAGTTCAATAAATGTTTCACAGTTtttatgttgtttttatttcccCTGGTTTTATACAGCATCCCATGAAACCCATTCTTTAAACAATACAGGTTTTAAACAGATGTTGAAACAGACTAAACAAAGGGACTAGTTGGAGCTTGACTGCATGATGGGTTGCTATTAGTAGAAAATGAATGTAAATCAACAAATACATAAACTTTTGGAGATATTTACTGATGAGAAGCTTCCGTTTTATCATGCTAAGATACATCAATTGTCCTCAAACAAAGTAAAATTATGAGAAGACAACTATACATTGAATCATATTagaaaataatgaaacatgttatatatatattagagcAGGGTTTTCCGAACTcagtcctgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254497 lncRNA upstream 354 10023515 ~ 10024115 (+) True G222813
TU254453 lncRNA upstream 25695 9973761 ~ 9998774 (+) True LOC110508650
TU254482 lncRNA upstream 56699 9967478 ~ 9967770 (+) True G222799
TU254480 lncRNA upstream 59209 9964654 ~ 9965260 (+) True G222797
TU254446 lncRNA upstream 86923 9937196 ~ 9937546 (+) True G222770
TU254525 lncRNA downstream 48688 10073542 ~ 10073772 (+) True G222838
TU254526 lncRNA downstream 49016 10073870 ~ 10074374 (+) True G222839
TU254489 lncRNA downstream 49871 10074725 ~ 10075966 (+) True G222805
TU254465 lncRNA downstream 71329 10096183 ~ 10099336 (+) True G222782
TU254459 lncRNA downstream 74602 10099456 ~ 10105221 (+) False G222778
XM_036968368.1 mRNA upstream 6028 10006029 ~ 10018441 (+) False cnot3a
XM_036968385.1 mRNA downstream 53191 10078045 ~ 10094991 (+) False LOC110508764
XM_036968384.1 mRNA downstream 53193 10078047 ~ 10094991 (+) False LOC110508764
XM_036968387.1 mRNA downstream 53193 10078047 ~ 10094991 (+) False LOC110508764
XM_036968386.1 mRNA downstream 53195 10078049 ~ 10094991 (+) False LOC110508764
XM_036968388.1 mRNA downstream 57009 10081863 ~ 10094991 (+) True LOC110508764
TU254395 other upstream 111371 9903112 ~ 9913098 (+) True sphk2
TU253897 other upstream 342717 9679760 ~ 9681752 (+) True G222353
TU253887 other upstream 413330 9606305 ~ 9611139 (+) True G222345
TU253820 other upstream 517683 9502604 ~ 9506786 (+) False LOC110520820
TU253800 other upstream 578765 9445047 ~ 9445704 (+) True G222287
TU254560 other downstream 249271 10274125 ~ 10276173 (+) True LOC110508845
TU254625 other downstream 286828 10311682 ~ 10312252 (+) True LOC110508886
TU255198 other downstream 691797 10716651 ~ 10750403 (+) False LOC110520833
TU255234 other downstream 728763 10753617 ~ 10767669 (+) False LOC110520833
TU255248 other downstream 728763 10753617 ~ 10767669 (+) False LOC110520833

Expression Profile